Strain Fitness in Sinorhizobium meliloti 1021 around SMc02522

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02523 and SMc02522 are separated by 157 nucleotidesSMc02522 and SMc02521 are separated by 167 nucleotides SMc02523: SMc02523 - transcriptional regulator, at 3,268,382 to 3,269,278 SMc02523 SMc02522: SMc02522 - oxidoreductase, at 3,269,436 to 3,270,206 SMc02522 SMc02521: SMc02521 - glycerol-3-phosphate regulon repressor transcription regulator protein, at 3,270,374 to 3,271,138 SMc02521 Position (kb) 3269 3270 3271Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3268.555 kb on + strand, within SMc02523at 3268.555 kb on + strand, within SMc02523at 3268.556 kb on - strand, within SMc02523at 3268.556 kb on - strand, within SMc02523at 3268.703 kb on + strand, within SMc02523at 3268.777 kb on + strand, within SMc02523at 3268.778 kb on - strand, within SMc02523at 3268.788 kb on + strand, within SMc02523at 3268.789 kb on - strand, within SMc02523at 3269.005 kb on + strand, within SMc02523at 3269.006 kb on - strand, within SMc02523at 3269.006 kb on - strandat 3269.006 kb on - strand, within SMc02523at 3269.053 kb on + strand, within SMc02523at 3269.054 kb on - strand, within SMc02523at 3269.054 kb on - strand, within SMc02523at 3269.289 kb on + strandat 3269.290 kb on - strandat 3269.325 kb on + strandat 3269.483 kb on + strandat 3269.485 kb on + strandat 3269.602 kb on + strand, within SMc02522at 3269.696 kb on - strand, within SMc02522at 3269.725 kb on + strand, within SMc02522at 3269.725 kb on + strand, within SMc02522at 3269.725 kb on + strand, within SMc02522at 3269.726 kb on - strand, within SMc02522at 3270.089 kb on + strand, within SMc02522at 3270.089 kb on + strand, within SMc02522at 3270.090 kb on - strand, within SMc02522at 3270.090 kb on - strand, within SMc02522at 3270.202 kb on + strandat 3270.203 kb on - strandat 3270.203 kb on - strandat 3270.257 kb on - strandat 3270.304 kb on + strandat 3270.310 kb on + strandat 3270.346 kb on - strandat 3270.377 kb on + strandat 3270.377 kb on + strandat 3270.378 kb on - strandat 3270.572 kb on + strand, within SMc02521at 3270.929 kb on + strand, within SMc02521at 3271.036 kb on + strand, within SMc02521at 3271.036 kb on + strand, within SMc02521

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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3,268,555 + SMc02523 0.19 +0.7
3,268,555 + SMc02523 0.19 -2.7
3,268,556 - SMc02523 0.19 -1.9
3,268,556 - SMc02523 0.19 +0.9
3,268,703 + SMc02523 0.36 -1.8
3,268,777 + SMc02523 0.44 +0.8
3,268,778 - SMc02523 0.44 -1.0
3,268,788 + SMc02523 0.45 +0.8
3,268,789 - SMc02523 0.45 +0.7
3,269,005 + SMc02523 0.69 -0.9
3,269,006 - SMc02523 0.70 -0.8
3,269,006 - +3.3
3,269,006 - SMc02523 0.70 -0.9
3,269,053 + SMc02523 0.75 -0.4
3,269,054 - SMc02523 0.75 -0.8
3,269,054 - SMc02523 0.75 -0.3
3,269,289 + -0.4
3,269,290 - +0.1
3,269,325 + -0.3
3,269,483 + -0.7
3,269,485 + -0.7
3,269,602 + SMc02522 0.22 +0.7
3,269,696 - SMc02522 0.34 -1.1
3,269,725 + SMc02522 0.37 -1.3
3,269,725 + SMc02522 0.37 -2.7
3,269,725 + SMc02522 0.37 -0.5
3,269,726 - SMc02522 0.38 +0.3
3,270,089 + SMc02522 0.85 -2.5
3,270,089 + SMc02522 0.85 -0.4
3,270,090 - SMc02522 0.85 -0.5
3,270,090 - SMc02522 0.85 -0.2
3,270,202 + -1.6
3,270,203 - +0.7
3,270,203 - -0.3
3,270,257 - -0.5
3,270,304 + -1.2
3,270,310 + -1.7
3,270,346 - -0.3
3,270,377 + -0.9
3,270,377 + +1.4
3,270,378 - +0.2
3,270,572 + SMc02521 0.26 -1.5
3,270,929 + SMc02521 0.73 +0.5
3,271,036 + SMc02521 0.87 +0.7
3,271,036 + SMc02521 0.87 +0.2

Or see this region's nucleotide sequence