Strain Fitness in Sinorhizobium meliloti 1021 around SMc02435

Experiment: Chlorite 0.1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02434 and SMc02435 are separated by 331 nucleotidesSMc02435 and SMc02436 are separated by 6 nucleotides SMc02434: SMc02434 - hypothetical protein, at 2,817,138 to 2,817,782 SMc02434 SMc02435: SMc02435 - methyltransferase, at 2,818,114 to 2,818,995 SMc02435 SMc02436: SMc02436 - peptide chain release factor 1, at 2,819,002 to 2,820,084 SMc02436 Position (kb) 2818 2819Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2817.116 kb on + strandat 2817.116 kb on + strandat 2817.117 kb on - strandat 2817.117 kb on - strandat 2817.140 kb on - strandat 2817.140 kb on - strandat 2817.140 kb on - strandat 2817.140 kb on - strandat 2817.165 kb on - strandat 2817.418 kb on + strand, within SMc02434at 2817.469 kb on + strand, within SMc02434at 2817.470 kb on - strand, within SMc02434at 2817.470 kb on - strand, within SMc02434at 2817.809 kb on - strandat 2817.916 kb on - strandat 2817.949 kb on - strandat 2817.989 kb on - strandat 2818.138 kb on - strandat 2818.264 kb on + strand, within SMc02435at 2818.367 kb on + strand, within SMc02435at 2818.435 kb on - strand, within SMc02435at 2818.549 kb on - strand, within SMc02435at 2819.045 kb on + strandat 2819.046 kb on - strandat 2819.046 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
remove
2,817,116 + +1.6
2,817,116 + +0.3
2,817,117 - +1.8
2,817,117 - +2.4
2,817,140 - +1.7
2,817,140 - +1.6
2,817,140 - +2.7
2,817,140 - +2.5
2,817,165 - +2.7
2,817,418 + SMc02434 0.43 +2.4
2,817,469 + SMc02434 0.51 -0.1
2,817,470 - SMc02434 0.51 -1.6
2,817,470 - SMc02434 0.51 +0.1
2,817,809 - -1.5
2,817,916 - -3.4
2,817,949 - +2.4
2,817,989 - -1.0
2,818,138 - +0.6
2,818,264 + SMc02435 0.17 -2.9
2,818,367 + SMc02435 0.29 -2.9
2,818,435 - SMc02435 0.36 -3.0
2,818,549 - SMc02435 0.49 -2.4
2,819,045 + +0.6
2,819,046 - +1.0
2,819,046 - -1.0

Or see this region's nucleotide sequence