Strain Fitness in Sinorhizobium meliloti 1021 around SMc02022

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02021 and SMc02022 are separated by 401 nucleotidesSMc02022 and SMc02023 are separated by 134 nucleotidesSMc02023 and SMc02024 are separated by 25 nucleotides SMc02021: SMc02021 - periplasmic binding ABC transporter protein, at 2,724,226 to 2,725,260 SMc02021 SMc02022: SMc02022 - transcriptional regulator, at 2,725,662 to 2,726,654 SMc02022 SMc02023: SMc02023 - hypothetical protein, at 2,726,789 to 2,727,064 SMc02023 SMc02024: SMc02024 - hypothetical protein, at 2,727,090 to 2,728,550 SMc02024 Position (kb) 2725 2726 2727Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2724.755 kb on + strand, within SMc02021at 2724.755 kb on + strand, within SMc02021at 2724.756 kb on - strand, within SMc02021at 2724.756 kb on - strand, within SMc02021at 2724.854 kb on + strand, within SMc02021at 2724.854 kb on + strand, within SMc02021at 2724.854 kb on + strand, within SMc02021at 2724.927 kb on + strand, within SMc02021at 2724.928 kb on - strand, within SMc02021at 2725.037 kb on - strand, within SMc02021at 2725.087 kb on - strand, within SMc02021at 2725.175 kb on - strandat 2725.257 kb on - strandat 2725.670 kb on + strandat 2725.671 kb on - strandat 2725.748 kb on + strandat 2725.788 kb on + strand, within SMc02022at 2725.788 kb on + strand, within SMc02022at 2725.789 kb on - strand, within SMc02022at 2725.804 kb on - strand, within SMc02022at 2725.927 kb on + strand, within SMc02022at 2725.927 kb on + strand, within SMc02022at 2725.927 kb on + strand, within SMc02022at 2725.927 kb on + strand, within SMc02022at 2725.927 kb on + strand, within SMc02022at 2725.927 kb on + strand, within SMc02022at 2725.927 kb on + strand, within SMc02022at 2725.927 kb on + strand, within SMc02022at 2725.928 kb on - strand, within SMc02022at 2725.928 kb on - strand, within SMc02022at 2725.928 kb on - strand, within SMc02022at 2725.928 kb on - strand, within SMc02022at 2725.928 kb on - strand, within SMc02022at 2726.086 kb on + strand, within SMc02022at 2726.170 kb on + strand, within SMc02022at 2726.170 kb on + strand, within SMc02022at 2726.170 kb on + strand, within SMc02022at 2726.188 kb on + strand, within SMc02022at 2726.188 kb on + strand, within SMc02022at 2726.188 kb on + strand, within SMc02022at 2726.188 kb on + strand, within SMc02022at 2726.189 kb on - strand, within SMc02022at 2726.189 kb on - strand, within SMc02022at 2726.189 kb on - strand, within SMc02022at 2726.189 kb on - strand, within SMc02022at 2726.262 kb on + strand, within SMc02022at 2726.391 kb on - strand, within SMc02022at 2726.397 kb on - strand, within SMc02022at 2726.397 kb on - strand, within SMc02022at 2726.495 kb on - strand, within SMc02022at 2726.654 kb on + strandat 2726.734 kb on - strandat 2726.781 kb on - strandat 2726.781 kb on - strandat 2726.913 kb on - strand, within SMc02023at 2726.924 kb on + strand, within SMc02023at 2726.925 kb on - strand, within SMc02023at 2726.927 kb on + strand, within SMc02023at 2726.927 kb on + strand, within SMc02023at 2726.928 kb on - strand, within SMc02023at 2726.928 kb on - strand, within SMc02023at 2726.984 kb on + strand, within SMc02023at 2727.154 kb on + strandat 2727.154 kb on + strandat 2727.154 kb on + strandat 2727.314 kb on + strand, within SMc02024

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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2,724,755 + SMc02021 0.51 +1.0
2,724,755 + SMc02021 0.51 -1.4
2,724,756 - SMc02021 0.51 +0.4
2,724,756 - SMc02021 0.51 +1.1
2,724,854 + SMc02021 0.61 -1.1
2,724,854 + SMc02021 0.61 +1.8
2,724,854 + SMc02021 0.61 -0.6
2,724,927 + SMc02021 0.68 -1.3
2,724,928 - SMc02021 0.68 +0.3
2,725,037 - SMc02021 0.78 +2.9
2,725,087 - SMc02021 0.83 -0.9
2,725,175 - -0.4
2,725,257 - -0.5
2,725,670 + -1.0
2,725,671 - -0.1
2,725,748 + -0.7
2,725,788 + SMc02022 0.13 +0.6
2,725,788 + SMc02022 0.13 -1.6
2,725,789 - SMc02022 0.13 +0.3
2,725,804 - SMc02022 0.14 -0.4
2,725,927 + SMc02022 0.27 -1.7
2,725,927 + SMc02022 0.27 +1.4
2,725,927 + SMc02022 0.27 -0.7
2,725,927 + SMc02022 0.27 -1.1
2,725,927 + SMc02022 0.27 +0.6
2,725,927 + SMc02022 0.27 +0.1
2,725,927 + SMc02022 0.27 -0.4
2,725,927 + SMc02022 0.27 +2.0
2,725,928 - SMc02022 0.27 +0.9
2,725,928 - SMc02022 0.27 -1.8
2,725,928 - SMc02022 0.27 -0.1
2,725,928 - SMc02022 0.27 -2.7
2,725,928 - SMc02022 0.27 +0.4
2,726,086 + SMc02022 0.43 +0.3
2,726,170 + SMc02022 0.51 -1.8
2,726,170 + SMc02022 0.51 +0.4
2,726,170 + SMc02022 0.51 +0.1
2,726,188 + SMc02022 0.53 -3.5
2,726,188 + SMc02022 0.53 +0.1
2,726,188 + SMc02022 0.53 +0.9
2,726,188 + SMc02022 0.53 +0.4
2,726,189 - SMc02022 0.53 +0.6
2,726,189 - SMc02022 0.53 +0.3
2,726,189 - SMc02022 0.53 -1.4
2,726,189 - SMc02022 0.53 +0.7
2,726,262 + SMc02022 0.60 -1.0
2,726,391 - SMc02022 0.73 +0.9
2,726,397 - SMc02022 0.74 -0.6
2,726,397 - SMc02022 0.74 +0.5
2,726,495 - SMc02022 0.84 -0.4
2,726,654 + +1.2
2,726,734 - +0.9
2,726,781 - +0.6
2,726,781 - +0.6
2,726,913 - SMc02023 0.45 -0.1
2,726,924 + SMc02023 0.49 -1.4
2,726,925 - SMc02023 0.49 +0.1
2,726,927 + SMc02023 0.50 +1.1
2,726,927 + SMc02023 0.50 -0.1
2,726,928 - SMc02023 0.50 -1.2
2,726,928 - SMc02023 0.50 +0.1
2,726,984 + SMc02023 0.71 +0.9
2,727,154 + +0.8
2,727,154 + -3.7
2,727,154 + -1.3
2,727,314 + SMc02024 0.15 +0.2

Or see this region's nucleotide sequence