Experiment: Chlorite 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02021 and SMc02022 are separated by 401 nucleotides SMc02022 and SMc02023 are separated by 134 nucleotides SMc02023 and SMc02024 are separated by 25 nucleotides
SMc02021: SMc02021 - periplasmic binding ABC transporter protein, at 2,724,226 to 2,725,260
SMc02021
SMc02022: SMc02022 - transcriptional regulator, at 2,725,662 to 2,726,654
SMc02022
SMc02023: SMc02023 - hypothetical protein, at 2,726,789 to 2,727,064
SMc02023
SMc02024: SMc02024 - hypothetical protein, at 2,727,090 to 2,728,550
SMc02024
Position (kb)
2725
2726
2727 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2724.755 kb on + strand, within SMc02021 at 2724.755 kb on + strand, within SMc02021 at 2724.756 kb on - strand, within SMc02021 at 2724.756 kb on - strand, within SMc02021 at 2724.854 kb on + strand, within SMc02021 at 2724.854 kb on + strand, within SMc02021 at 2724.854 kb on + strand, within SMc02021 at 2724.927 kb on + strand, within SMc02021 at 2724.928 kb on - strand, within SMc02021 at 2725.037 kb on - strand, within SMc02021 at 2725.087 kb on - strand, within SMc02021 at 2725.175 kb on - strand at 2725.257 kb on - strand at 2725.670 kb on + strand at 2725.671 kb on - strand at 2725.748 kb on + strand at 2725.788 kb on + strand, within SMc02022 at 2725.788 kb on + strand, within SMc02022 at 2725.789 kb on - strand, within SMc02022 at 2725.804 kb on - strand, within SMc02022 at 2725.927 kb on + strand, within SMc02022 at 2725.927 kb on + strand, within SMc02022 at 2725.927 kb on + strand, within SMc02022 at 2725.927 kb on + strand, within SMc02022 at 2725.927 kb on + strand, within SMc02022 at 2725.927 kb on + strand, within SMc02022 at 2725.927 kb on + strand, within SMc02022 at 2725.927 kb on + strand, within SMc02022 at 2725.928 kb on - strand, within SMc02022 at 2725.928 kb on - strand, within SMc02022 at 2725.928 kb on - strand, within SMc02022 at 2725.928 kb on - strand, within SMc02022 at 2725.928 kb on - strand, within SMc02022 at 2726.086 kb on + strand, within SMc02022 at 2726.170 kb on + strand, within SMc02022 at 2726.170 kb on + strand, within SMc02022 at 2726.170 kb on + strand, within SMc02022 at 2726.188 kb on + strand, within SMc02022 at 2726.188 kb on + strand, within SMc02022 at 2726.188 kb on + strand, within SMc02022 at 2726.188 kb on + strand, within SMc02022 at 2726.189 kb on - strand, within SMc02022 at 2726.189 kb on - strand, within SMc02022 at 2726.189 kb on - strand, within SMc02022 at 2726.189 kb on - strand, within SMc02022 at 2726.262 kb on + strand, within SMc02022 at 2726.391 kb on - strand, within SMc02022 at 2726.397 kb on - strand, within SMc02022 at 2726.397 kb on - strand, within SMc02022 at 2726.495 kb on - strand, within SMc02022 at 2726.654 kb on + strand at 2726.734 kb on - strand at 2726.781 kb on - strand at 2726.781 kb on - strand at 2726.913 kb on - strand, within SMc02023 at 2726.924 kb on + strand, within SMc02023 at 2726.925 kb on - strand, within SMc02023 at 2726.927 kb on + strand, within SMc02023 at 2726.927 kb on + strand, within SMc02023 at 2726.928 kb on - strand, within SMc02023 at 2726.928 kb on - strand, within SMc02023 at 2726.984 kb on + strand, within SMc02023 at 2727.154 kb on + strand at 2727.154 kb on + strand at 2727.154 kb on + strand at 2727.314 kb on + strand, within SMc02024
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.1 mM remove 2,724,755 + SMc02021 0.51 +1.0 2,724,755 + SMc02021 0.51 -1.4 2,724,756 - SMc02021 0.51 +0.4 2,724,756 - SMc02021 0.51 +1.1 2,724,854 + SMc02021 0.61 -1.1 2,724,854 + SMc02021 0.61 +1.8 2,724,854 + SMc02021 0.61 -0.6 2,724,927 + SMc02021 0.68 -1.3 2,724,928 - SMc02021 0.68 +0.3 2,725,037 - SMc02021 0.78 +2.9 2,725,087 - SMc02021 0.83 -0.9 2,725,175 - -0.4 2,725,257 - -0.5 2,725,670 + -1.0 2,725,671 - -0.1 2,725,748 + -0.7 2,725,788 + SMc02022 0.13 +0.6 2,725,788 + SMc02022 0.13 -1.6 2,725,789 - SMc02022 0.13 +0.3 2,725,804 - SMc02022 0.14 -0.4 2,725,927 + SMc02022 0.27 -1.7 2,725,927 + SMc02022 0.27 +1.4 2,725,927 + SMc02022 0.27 -0.7 2,725,927 + SMc02022 0.27 -1.1 2,725,927 + SMc02022 0.27 +0.6 2,725,927 + SMc02022 0.27 +0.1 2,725,927 + SMc02022 0.27 -0.4 2,725,927 + SMc02022 0.27 +2.0 2,725,928 - SMc02022 0.27 +0.9 2,725,928 - SMc02022 0.27 -1.8 2,725,928 - SMc02022 0.27 -0.1 2,725,928 - SMc02022 0.27 -2.7 2,725,928 - SMc02022 0.27 +0.4 2,726,086 + SMc02022 0.43 +0.3 2,726,170 + SMc02022 0.51 -1.8 2,726,170 + SMc02022 0.51 +0.4 2,726,170 + SMc02022 0.51 +0.1 2,726,188 + SMc02022 0.53 -3.5 2,726,188 + SMc02022 0.53 +0.1 2,726,188 + SMc02022 0.53 +0.9 2,726,188 + SMc02022 0.53 +0.4 2,726,189 - SMc02022 0.53 +0.6 2,726,189 - SMc02022 0.53 +0.3 2,726,189 - SMc02022 0.53 -1.4 2,726,189 - SMc02022 0.53 +0.7 2,726,262 + SMc02022 0.60 -1.0 2,726,391 - SMc02022 0.73 +0.9 2,726,397 - SMc02022 0.74 -0.6 2,726,397 - SMc02022 0.74 +0.5 2,726,495 - SMc02022 0.84 -0.4 2,726,654 + +1.2 2,726,734 - +0.9 2,726,781 - +0.6 2,726,781 - +0.6 2,726,913 - SMc02023 0.45 -0.1 2,726,924 + SMc02023 0.49 -1.4 2,726,925 - SMc02023 0.49 +0.1 2,726,927 + SMc02023 0.50 +1.1 2,726,927 + SMc02023 0.50 -0.1 2,726,928 - SMc02023 0.50 -1.2 2,726,928 - SMc02023 0.50 +0.1 2,726,984 + SMc02023 0.71 +0.9 2,727,154 + +0.8 2,727,154 + -3.7 2,727,154 + -1.3 2,727,314 + SMc02024 0.15 +0.2
Or see this region's nucleotide sequence