Strain Fitness in Sinorhizobium meliloti 1021 around SMc01883

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01885 and SMc01884 are separated by 187 nucleotidesSMc01884 and SMc01883 are separated by 116 nucleotidesSMc01883 and SMc01882 are separated by 3 nucleotidesSMc01882 and SMc01881 are separated by 204 nucleotides SMc01885: SMc01885 - aminopeptidase P protein, at 2,321,566 to 2,323,401 SMc01885 SMc01884: SMc01884 - signal peptide protein, at 2,323,589 to 2,323,828 SMc01884 SMc01883: SMc01883 - hypothetical protein, at 2,323,945 to 2,324,253 SMc01883 SMc01882: SMc01882 - hypothetical protein, at 2,324,257 to 2,324,973 SMc01882 SMc01881: SMc01881 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 2,325,178 to 2,325,999 SMc01881 Position (kb) 2323 2324 2325Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2323.033 kb on + strand, within SMc01885at 2323.034 kb on - strand, within SMc01885at 2323.034 kb on - strand, within SMc01885at 2323.123 kb on + strand, within SMc01885at 2323.124 kb on - strand, within SMc01885at 2323.210 kb on - strand, within SMc01885at 2323.306 kb on + strandat 2323.380 kb on + strandat 2323.381 kb on - strandat 2323.400 kb on - strandat 2323.494 kb on - strandat 2323.495 kb on + strandat 2323.496 kb on - strandat 2323.883 kb on + strandat 2323.946 kb on + strandat 2323.946 kb on + strandat 2323.947 kb on - strandat 2324.069 kb on + strand, within SMc01883at 2324.070 kb on - strand, within SMc01883at 2324.070 kb on - strand, within SMc01883at 2324.146 kb on + strand, within SMc01883at 2324.146 kb on + strand, within SMc01883at 2324.147 kb on - strand, within SMc01883at 2324.166 kb on + strand, within SMc01883at 2324.195 kb on + strand, within SMc01883at 2324.195 kb on + strand, within SMc01883at 2324.195 kb on + strand, within SMc01883at 2324.195 kb on + strand, within SMc01883at 2324.196 kb on - strand, within SMc01883at 2324.225 kb on + strandat 2324.225 kb on + strandat 2324.225 kb on + strandat 2324.225 kb on + strandat 2324.226 kb on - strandat 2324.466 kb on - strand, within SMc01882at 2324.541 kb on + strand, within SMc01882at 2324.561 kb on + strand, within SMc01882at 2324.561 kb on + strand, within SMc01882at 2324.561 kb on + strand, within SMc01882at 2324.561 kb on + strand, within SMc01882at 2324.562 kb on - strand, within SMc01882at 2324.585 kb on + strand, within SMc01882at 2324.829 kb on - strand, within SMc01882at 2324.849 kb on - strand, within SMc01882at 2324.849 kb on - strand, within SMc01882at 2325.018 kb on + strandat 2325.019 kb on - strandat 2325.134 kb on + strandat 2325.139 kb on + strandat 2325.139 kb on + strandat 2325.139 kb on + strandat 2325.140 kb on - strandat 2325.140 kb on - strandat 2325.140 kb on - strandat 2325.205 kb on + strandat 2325.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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2,323,033 + SMc01885 0.80 +1.9
2,323,034 - SMc01885 0.80 +0.6
2,323,034 - SMc01885 0.80 +0.3
2,323,123 + SMc01885 0.85 -1.8
2,323,124 - SMc01885 0.85 +2.6
2,323,210 - SMc01885 0.90 +1.6
2,323,306 + +2.6
2,323,380 + -0.1
2,323,381 - +4.0
2,323,400 - +0.8
2,323,494 - -0.3
2,323,495 + +1.5
2,323,496 - +0.5
2,323,883 + -0.1
2,323,946 + -0.9
2,323,946 + -0.1
2,323,947 - +0.4
2,324,069 + SMc01883 0.40 -0.8
2,324,070 - SMc01883 0.40 -1.2
2,324,070 - SMc01883 0.40 +1.4
2,324,146 + SMc01883 0.65 +1.4
2,324,146 + SMc01883 0.65 +0.2
2,324,147 - SMc01883 0.65 +0.5
2,324,166 + SMc01883 0.72 -1.0
2,324,195 + SMc01883 0.81 +0.3
2,324,195 + SMc01883 0.81 -2.7
2,324,195 + SMc01883 0.81 +4.6
2,324,195 + SMc01883 0.81 +2.3
2,324,196 - SMc01883 0.81 +0.1
2,324,225 + -0.6
2,324,225 + -1.9
2,324,225 + +0.3
2,324,225 + +0.0
2,324,226 - -1.6
2,324,466 - SMc01882 0.29 -0.1
2,324,541 + SMc01882 0.40 -1.8
2,324,561 + SMc01882 0.42 -0.9
2,324,561 + SMc01882 0.42 +0.6
2,324,561 + SMc01882 0.42 +0.3
2,324,561 + SMc01882 0.42 +1.2
2,324,562 - SMc01882 0.43 -0.4
2,324,585 + SMc01882 0.46 +1.1
2,324,829 - SMc01882 0.80 -1.7
2,324,849 - SMc01882 0.83 +2.2
2,324,849 - SMc01882 0.83 -0.1
2,325,018 + -0.0
2,325,019 - +1.5
2,325,134 + -0.0
2,325,139 + -0.4
2,325,139 + -1.9
2,325,139 + -0.0
2,325,140 - +2.4
2,325,140 - -0.7
2,325,140 - -0.4
2,325,205 + -3.9
2,325,206 - -0.6

Or see this region's nucleotide sequence