Experiment: Chlorite 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04455 and SMc01573 are separated by 495 nucleotides SMc01573 and SMc01574 are separated by 72 nucleotides
SMc04455: SMc04455 - thiamine pyrophosphate protein, at 2,378,906 to 2,380,552
SMc04455
SMc01573: SMc01573 - hypothetical protein, at 2,381,048 to 2,381,386
SMc01573
SMc01574: SMc01574 - hypothetical protein, at 2,381,459 to 2,382,295
SMc01574
Position (kb)
2381
2382 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2380.064 kb on + strand, within SMc04455 at 2380.064 kb on + strand, within SMc04455 at 2380.065 kb on - strand, within SMc04455 at 2380.065 kb on - strand, within SMc04455 at 2380.297 kb on + strand, within SMc04455 at 2380.297 kb on + strand, within SMc04455 at 2380.297 kb on + strand, within SMc04455 at 2380.298 kb on - strand, within SMc04455 at 2380.301 kb on + strand, within SMc04455 at 2380.302 kb on - strand, within SMc04455 at 2380.302 kb on - strand, within SMc04455 at 2380.306 kb on + strand, within SMc04455 at 2380.306 kb on + strand, within SMc04455 at 2380.307 kb on - strand at 2380.363 kb on + strand, within SMc04455 at 2380.364 kb on - strand, within SMc04455 at 2380.398 kb on - strand at 2380.550 kb on + strand at 2380.551 kb on - strand at 2380.566 kb on + strand at 2380.765 kb on + strand at 2380.765 kb on + strand at 2380.824 kb on - strand at 2381.077 kb on - strand at 2381.110 kb on - strand, within SMc01573 at 2381.358 kb on + strand at 2381.420 kb on + strand at 2381.485 kb on - strand at 2381.844 kb on + strand, within SMc01574 at 2381.844 kb on + strand, within SMc01574 at 2381.844 kb on + strand, within SMc01574 at 2381.845 kb on - strand, within SMc01574 at 2381.845 kb on - strand, within SMc01574 at 2381.845 kb on - strand, within SMc01574 at 2381.845 kb on - strand, within SMc01574 at 2381.989 kb on + strand, within SMc01574 at 2382.060 kb on + strand, within SMc01574 at 2382.060 kb on + strand, within SMc01574 at 2382.060 kb on + strand, within SMc01574 at 2382.061 kb on - strand, within SMc01574 at 2382.063 kb on + strand, within SMc01574 at 2382.063 kb on + strand, within SMc01574 at 2382.063 kb on + strand, within SMc01574 at 2382.064 kb on - strand, within SMc01574 at 2382.064 kb on - strand, within SMc01574 at 2382.341 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.1 mM remove 2,380,064 + SMc04455 0.70 +0.5 2,380,064 + SMc04455 0.70 -0.3 2,380,065 - SMc04455 0.70 -0.7 2,380,065 - SMc04455 0.70 +0.8 2,380,297 + SMc04455 0.84 +0.7 2,380,297 + SMc04455 0.84 -1.1 2,380,297 + SMc04455 0.84 +0.1 2,380,298 - SMc04455 0.85 -1.3 2,380,301 + SMc04455 0.85 +3.5 2,380,302 - SMc04455 0.85 -0.2 2,380,302 - SMc04455 0.85 -1.1 2,380,306 + SMc04455 0.85 -0.4 2,380,306 + SMc04455 0.85 +2.9 2,380,307 - +0.7 2,380,363 + SMc04455 0.88 +1.2 2,380,364 - SMc04455 0.89 -1.3 2,380,398 - -1.7 2,380,550 + +1.4 2,380,551 - +0.8 2,380,566 + -0.5 2,380,765 + -2.2 2,380,765 + -0.5 2,380,824 - -2.2 2,381,077 - -2.1 2,381,110 - SMc01573 0.18 +0.4 2,381,358 + -1.8 2,381,420 + -0.9 2,381,485 - +0.4 2,381,844 + SMc01574 0.46 +0.7 2,381,844 + SMc01574 0.46 -0.3 2,381,844 + SMc01574 0.46 +0.7 2,381,845 - SMc01574 0.46 -0.3 2,381,845 - SMc01574 0.46 -2.3 2,381,845 - SMc01574 0.46 +1.2 2,381,845 - SMc01574 0.46 -0.9 2,381,989 + SMc01574 0.63 +0.3 2,382,060 + SMc01574 0.72 -0.7 2,382,060 + SMc01574 0.72 -0.9 2,382,060 + SMc01574 0.72 -1.6 2,382,061 - SMc01574 0.72 +0.8 2,382,063 + SMc01574 0.72 +0.1 2,382,063 + SMc01574 0.72 +2.5 2,382,063 + SMc01574 0.72 +1.0 2,382,064 - SMc01574 0.72 -3.3 2,382,064 - SMc01574 0.72 -3.9 2,382,341 + +0.4
Or see this region's nucleotide sequence