Strain Fitness in Sinorhizobium meliloti 1021 around SMc01573

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04455 and SMc01573 are separated by 495 nucleotidesSMc01573 and SMc01574 are separated by 72 nucleotides SMc04455: SMc04455 - thiamine pyrophosphate protein, at 2,378,906 to 2,380,552 SMc04455 SMc01573: SMc01573 - hypothetical protein, at 2,381,048 to 2,381,386 SMc01573 SMc01574: SMc01574 - hypothetical protein, at 2,381,459 to 2,382,295 SMc01574 Position (kb) 2381 2382Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2380.064 kb on + strand, within SMc04455at 2380.064 kb on + strand, within SMc04455at 2380.065 kb on - strand, within SMc04455at 2380.065 kb on - strand, within SMc04455at 2380.297 kb on + strand, within SMc04455at 2380.297 kb on + strand, within SMc04455at 2380.297 kb on + strand, within SMc04455at 2380.298 kb on - strand, within SMc04455at 2380.301 kb on + strand, within SMc04455at 2380.302 kb on - strand, within SMc04455at 2380.302 kb on - strand, within SMc04455at 2380.306 kb on + strand, within SMc04455at 2380.306 kb on + strand, within SMc04455at 2380.307 kb on - strandat 2380.363 kb on + strand, within SMc04455at 2380.364 kb on - strand, within SMc04455at 2380.398 kb on - strandat 2380.550 kb on + strandat 2380.551 kb on - strandat 2380.566 kb on + strandat 2380.765 kb on + strandat 2380.765 kb on + strandat 2380.824 kb on - strandat 2381.077 kb on - strandat 2381.110 kb on - strand, within SMc01573at 2381.358 kb on + strandat 2381.420 kb on + strandat 2381.485 kb on - strandat 2381.844 kb on + strand, within SMc01574at 2381.844 kb on + strand, within SMc01574at 2381.844 kb on + strand, within SMc01574at 2381.845 kb on - strand, within SMc01574at 2381.845 kb on - strand, within SMc01574at 2381.845 kb on - strand, within SMc01574at 2381.845 kb on - strand, within SMc01574at 2381.989 kb on + strand, within SMc01574at 2382.060 kb on + strand, within SMc01574at 2382.060 kb on + strand, within SMc01574at 2382.060 kb on + strand, within SMc01574at 2382.061 kb on - strand, within SMc01574at 2382.063 kb on + strand, within SMc01574at 2382.063 kb on + strand, within SMc01574at 2382.063 kb on + strand, within SMc01574at 2382.064 kb on - strand, within SMc01574at 2382.064 kb on - strand, within SMc01574at 2382.341 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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2,380,064 + SMc04455 0.70 +0.5
2,380,064 + SMc04455 0.70 -0.3
2,380,065 - SMc04455 0.70 -0.7
2,380,065 - SMc04455 0.70 +0.8
2,380,297 + SMc04455 0.84 +0.7
2,380,297 + SMc04455 0.84 -1.1
2,380,297 + SMc04455 0.84 +0.1
2,380,298 - SMc04455 0.85 -1.3
2,380,301 + SMc04455 0.85 +3.5
2,380,302 - SMc04455 0.85 -0.2
2,380,302 - SMc04455 0.85 -1.1
2,380,306 + SMc04455 0.85 -0.4
2,380,306 + SMc04455 0.85 +2.9
2,380,307 - +0.7
2,380,363 + SMc04455 0.88 +1.2
2,380,364 - SMc04455 0.89 -1.3
2,380,398 - -1.7
2,380,550 + +1.4
2,380,551 - +0.8
2,380,566 + -0.5
2,380,765 + -2.2
2,380,765 + -0.5
2,380,824 - -2.2
2,381,077 - -2.1
2,381,110 - SMc01573 0.18 +0.4
2,381,358 + -1.8
2,381,420 + -0.9
2,381,485 - +0.4
2,381,844 + SMc01574 0.46 +0.7
2,381,844 + SMc01574 0.46 -0.3
2,381,844 + SMc01574 0.46 +0.7
2,381,845 - SMc01574 0.46 -0.3
2,381,845 - SMc01574 0.46 -2.3
2,381,845 - SMc01574 0.46 +1.2
2,381,845 - SMc01574 0.46 -0.9
2,381,989 + SMc01574 0.63 +0.3
2,382,060 + SMc01574 0.72 -0.7
2,382,060 + SMc01574 0.72 -0.9
2,382,060 + SMc01574 0.72 -1.6
2,382,061 - SMc01574 0.72 +0.8
2,382,063 + SMc01574 0.72 +0.1
2,382,063 + SMc01574 0.72 +2.5
2,382,063 + SMc01574 0.72 +1.0
2,382,064 - SMc01574 0.72 -3.3
2,382,064 - SMc01574 0.72 -3.9
2,382,341 + +0.4

Or see this region's nucleotide sequence