Strain Fitness in Sinorhizobium meliloti 1021 around SMc01156

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01158 and SMc01157 are separated by 104 nucleotidesSMc01157 and SMc01156 are separated by 87 nucleotidesSMc01156 and SMc01155 are separated by 4 nucleotidesSMc01155 and SMc01154 are separated by 145 nucleotides SMc01158: SMc01158 - hypothetical protein, at 392,096 to 392,701 SMc01158 SMc01157: SMc01157 - oxidoreductase, at 392,806 to 393,585 SMc01157 SMc01156: SMc01156 - ubiquinone biosynthesis protein, at 393,673 to 395,247 SMc01156 SMc01155: SMc01155 - ubiquinone/menaquinone biosynthesis methyltransferase, at 395,252 to 396,064 SMc01155 SMc01154: SMc01154 - formamidopyrimidine-DNA glycosylase, at 396,210 to 397,115 SMc01154 Position (kb) 393 394 395 396Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 392.861 kb on + strandat 392.862 kb on - strandat 392.862 kb on - strandat 392.862 kb on - strandat 393.571 kb on - strandat 393.571 kb on - strandat 393.585 kb on + strandat 393.585 kb on + strandat 393.585 kb on + strandat 393.585 kb on + strandat 393.585 kb on + strandat 393.586 kb on - strandat 396.128 kb on - strandat 396.130 kb on - strandat 396.130 kb on - strandat 396.130 kb on - strandat 396.130 kb on - strandat 396.130 kb on - strandat 396.130 kb on - strandat 396.130 kb on - strandat 396.187 kb on + strandat 396.188 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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392,861 + -2.3
392,862 - -0.0
392,862 - -0.7
392,862 - -0.3
393,571 - -2.4
393,571 - +1.7
393,585 + +0.1
393,585 + -0.9
393,585 + +1.2
393,585 + -3.5
393,585 + +1.8
393,586 - -1.2
396,128 - +0.7
396,130 - +0.9
396,130 - -0.5
396,130 - -1.8
396,130 - +1.0
396,130 - +0.4
396,130 - -0.3
396,130 - -0.3
396,187 + -1.6
396,188 - -0.1

Or see this region's nucleotide sequence