Strain Fitness in Sinorhizobium meliloti 1021 around SMc00599

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00598 and SMc00599 are separated by 132 nucleotidesSMc00599 and SMc00600 are separated by 4 nucleotidesSMc00600 and SMc00601 overlap by 4 nucleotides SMc00598: SMc00598 - branched chain amino acid ABC transporter permease, at 1,269,729 to 1,270,625 SMc00598 SMc00599: SMc00599 - molybdopterin MPT converting factor subunit 2, at 1,270,758 to 1,271,225 SMc00599 SMc00600: SMc00600 - molybdopterin MPT converting factor subunit 1, at 1,271,230 to 1,271,490 SMc00600 SMc00601: SMc00601 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,271,487 to 1,272,074 SMc00601 Position (kb) 1270 1271 1272Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1269.781 kb on - strandat 1269.781 kb on - strandat 1269.802 kb on - strandat 1269.843 kb on + strand, within SMc00598at 1269.983 kb on + strand, within SMc00598at 1269.984 kb on - strand, within SMc00598at 1270.251 kb on + strand, within SMc00598at 1270.252 kb on - strand, within SMc00598at 1270.264 kb on - strand, within SMc00598at 1270.264 kb on - strand, within SMc00598at 1270.329 kb on + strand, within SMc00598at 1270.329 kb on + strand, within SMc00598at 1270.329 kb on + strand, within SMc00598at 1270.341 kb on + strand, within SMc00598at 1270.341 kb on + strand, within SMc00598at 1270.392 kb on + strand, within SMc00598at 1270.392 kb on + strand, within SMc00598at 1270.393 kb on - strand, within SMc00598at 1270.393 kb on - strand, within SMc00598at 1270.395 kb on + strand, within SMc00598at 1270.536 kb on + strandat 1270.537 kb on - strandat 1270.946 kb on + strand, within SMc00599at 1271.028 kb on + strand, within SMc00599at 1271.028 kb on + strand, within SMc00599at 1271.062 kb on + strand, within SMc00599at 1271.062 kb on + strand, within SMc00599at 1271.063 kb on - strand, within SMc00599at 1271.354 kb on + strand, within SMc00600at 1271.354 kb on + strand, within SMc00600at 1271.355 kb on - strand, within SMc00600at 1271.355 kb on - strand, within SMc00600at 1271.355 kb on - strand, within SMc00600at 1271.469 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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1,269,781 - -1.4
1,269,781 - +0.6
1,269,802 - +0.2
1,269,843 + SMc00598 0.13 -0.1
1,269,983 + SMc00598 0.28 -0.4
1,269,984 - SMc00598 0.28 +0.6
1,270,251 + SMc00598 0.58 +0.2
1,270,252 - SMc00598 0.58 -0.4
1,270,264 - SMc00598 0.60 -0.0
1,270,264 - SMc00598 0.60 +0.1
1,270,329 + SMc00598 0.67 +0.7
1,270,329 + SMc00598 0.67 +0.4
1,270,329 + SMc00598 0.67 +1.5
1,270,341 + SMc00598 0.68 -0.8
1,270,341 + SMc00598 0.68 +0.1
1,270,392 + SMc00598 0.74 +0.6
1,270,392 + SMc00598 0.74 +0.2
1,270,393 - SMc00598 0.74 +0.3
1,270,393 - SMc00598 0.74 +1.6
1,270,395 + SMc00598 0.74 +0.6
1,270,536 + +0.5
1,270,537 - -2.2
1,270,946 + SMc00599 0.40 +0.2
1,271,028 + SMc00599 0.58 -2.4
1,271,028 + SMc00599 0.58 +0.6
1,271,062 + SMc00599 0.65 -3.1
1,271,062 + SMc00599 0.65 -1.8
1,271,063 - SMc00599 0.65 -3.1
1,271,354 + SMc00600 0.48 -3.8
1,271,354 + SMc00600 0.48 -1.4
1,271,355 - SMc00600 0.48 -1.4
1,271,355 - SMc00600 0.48 -2.8
1,271,355 - SMc00600 0.48 +1.6
1,271,469 - -0.7

Or see this region's nucleotide sequence