Strain Fitness in Sinorhizobium meliloti 1021 around SMc00533

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00301 and SMc00302 are separated by 95 nucleotidesSMc00302 and SMc00533 are separated by 10 nucleotidesSMc00533 and SMc00532 are separated by 12 nucleotides SMc00301: SMc00301 - hypothetical protein, at 1,874,133 to 1,874,525 SMc00301 SMc00302: SMc00302 - hypothetical protein, at 1,874,621 to 1,875,001 SMc00302 SMc00533: SMc00533 - pyridoxal-phosphate-dependent aminotransferase, at 1,875,012 to 1,876,256 SMc00533 SMc00532: SMc00532 - hypothetical protein, at 1,876,269 to 1,877,546 SMc00532 Position (kb) 1875 1876 1877Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1874.033 kb on - strandat 1874.069 kb on - strandat 1874.512 kb on - strandat 1874.525 kb on + strandat 1874.544 kb on - strandat 1874.583 kb on + strandat 1874.583 kb on + strandat 1874.583 kb on + strandat 1874.584 kb on - strandat 1874.584 kb on - strandat 1874.835 kb on + strand, within SMc00302at 1874.836 kb on - strand, within SMc00302at 1876.300 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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1,874,033 - -1.0
1,874,069 - -0.2
1,874,512 - -0.3
1,874,525 + +1.2
1,874,544 - +5.1
1,874,583 + -0.5
1,874,583 + -0.4
1,874,583 + +2.9
1,874,584 - -0.4
1,874,584 - -0.5
1,874,835 + SMc00302 0.56 -1.4
1,874,836 - SMc00302 0.56 -0.5
1,876,300 - +2.6

Or see this region's nucleotide sequence