Strain Fitness in Sinorhizobium meliloti 1021 around SMc00529

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00530 and SMc00529 are separated by 154 nucleotidesSMc00529 and SMc00528 are separated by 218 nucleotidesSMc00528 and SMc05006 are separated by 51 nucleotides SMc00530: SMc00530 - cysteine desulfurase activator complex subunit SufB, at 1,878,402 to 1,879,871 SMc00530 SMc00529: SMc00529 - pyridoxal-phosphate-dependent aminotransferase, at 1,880,026 to 1,881,192 SMc00529 SMc00528: SMc00528 - hypothetical protein, at 1,881,411 to 1,882,088 SMc00528 SMc05006: SMc05006 - hypothetical protein, at 1,882,140 to 1,882,454 SMc05006 Position (kb) 1880 1881 1882Strain fitness (log2 ratio) -1 0 1 2at 1879.918 kb on - strandat 1879.929 kb on - strandat 1879.944 kb on - strandat 1879.944 kb on - strandat 1881.174 kb on - strandat 1881.320 kb on + strandat 1882.130 kb on + strandat 1882.131 kb on - strandat 1882.131 kb on - strandat 1882.131 kb on - strandat 1882.131 kb on - strandat 1882.151 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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1,879,918 - +2.6
1,879,929 - +0.0
1,879,944 - -0.9
1,879,944 - +0.1
1,881,174 - +1.4
1,881,320 + +2.1
1,882,130 + +0.5
1,882,131 - +0.6
1,882,131 - +0.9
1,882,131 - +0.1
1,882,131 - +1.0
1,882,151 + +1.1

Or see this region's nucleotide sequence