Experiment: Chlorite 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00243 and SMc00245 overlap by 11 nucleotides SMc00245 and SMc00246 are separated by 146 nucleotides
SMc00243: SMc00243 - ABC transporter permease, at 1,811,020 to 1,812,114
SMc00243
SMc00245: SMc00245 - ABC transporter ATP-binding protein, at 1,812,104 to 1,813,690
SMc00245
SMc00246: SMc00246 - quinone oxidoreductase, at 1,813,837 to 1,814,814
SMc00246
Position (kb)
1812
1813
1814 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1811.190 kb on - strand, within SMc00243 at 1811.263 kb on - strand, within SMc00243 at 1811.460 kb on + strand, within SMc00243 at 1811.460 kb on + strand, within SMc00243 at 1811.461 kb on - strand, within SMc00243 at 1811.461 kb on - strand, within SMc00243 at 1811.461 kb on - strand, within SMc00243 at 1811.462 kb on + strand, within SMc00243 at 1811.523 kb on + strand, within SMc00243 at 1811.524 kb on - strand, within SMc00243 at 1811.524 kb on - strand, within SMc00243 at 1811.620 kb on + strand, within SMc00243 at 1811.620 kb on + strand, within SMc00243 at 1811.621 kb on - strand, within SMc00243 at 1811.621 kb on - strand, within SMc00243 at 1811.621 kb on - strand, within SMc00243 at 1811.652 kb on - strand, within SMc00243 at 1811.652 kb on - strand, within SMc00243 at 1811.652 kb on - strand, within SMc00243 at 1811.685 kb on + strand, within SMc00243 at 1811.686 kb on - strand, within SMc00243 at 1811.686 kb on - strand, within SMc00243 at 1811.691 kb on + strand, within SMc00243 at 1811.691 kb on + strand, within SMc00243 at 1811.691 kb on + strand, within SMc00243 at 1811.691 kb on + strand, within SMc00243 at 1811.691 kb on + strand, within SMc00243 at 1811.691 kb on + strand, within SMc00243 at 1811.691 kb on + strand, within SMc00243 at 1811.692 kb on - strand, within SMc00243 at 1811.767 kb on + strand, within SMc00243 at 1811.767 kb on + strand, within SMc00243 at 1811.789 kb on + strand, within SMc00243 at 1811.790 kb on - strand, within SMc00243 at 1811.790 kb on - strand, within SMc00243 at 1812.266 kb on + strand, within SMc00245 at 1812.757 kb on - strand, within SMc00245 at 1812.821 kb on + strand, within SMc00245 at 1812.821 kb on + strand, within SMc00245 at 1812.892 kb on + strand, within SMc00245 at 1812.893 kb on - strand, within SMc00245 at 1813.025 kb on + strand, within SMc00245 at 1813.026 kb on - strand, within SMc00245 at 1813.030 kb on + strand, within SMc00245 at 1813.093 kb on + strand, within SMc00245 at 1813.095 kb on + strand, within SMc00245 at 1813.095 kb on + strand, within SMc00245 at 1813.095 kb on + strand, within SMc00245 at 1813.095 kb on + strand, within SMc00245 at 1813.095 kb on + strand, within SMc00245 at 1813.096 kb on - strand, within SMc00245 at 1813.096 kb on - strand, within SMc00245 at 1813.096 kb on - strand, within SMc00245 at 1813.296 kb on + strand, within SMc00245 at 1813.296 kb on + strand, within SMc00245 at 1813.296 kb on + strand, within SMc00245 at 1813.297 kb on - strand, within SMc00245 at 1813.297 kb on - strand, within SMc00245 at 1813.297 kb on - strand, within SMc00245 at 1813.586 kb on + strand at 1813.586 kb on + strand at 1813.586 kb on + strand at 1813.587 kb on - strand at 1813.637 kb on - strand at 1813.789 kb on + strand at 1813.811 kb on - strand at 1813.827 kb on - strand at 1813.887 kb on + strand at 1813.887 kb on + strand at 1813.887 kb on + strand at 1813.916 kb on + strand at 1813.917 kb on - strand at 1813.929 kb on + strand at 1813.930 kb on - strand at 1813.930 kb on - strand at 1813.935 kb on + strand, within SMc00246 at 1813.935 kb on + strand, within SMc00246 at 1813.936 kb on - strand, within SMc00246 at 1813.936 kb on - strand, within SMc00246 at 1814.009 kb on + strand, within SMc00246 at 1814.010 kb on - strand, within SMc00246 at 1814.010 kb on - strand, within SMc00246 at 1814.010 kb on - strand, within SMc00246 at 1814.010 kb on - strand, within SMc00246 at 1814.037 kb on - strand, within SMc00246 at 1814.240 kb on + strand at 1814.259 kb on - strand, within SMc00246 at 1814.426 kb on + strand, within SMc00246 at 1814.427 kb on - strand, within SMc00246 at 1814.512 kb on + strand, within SMc00246 at 1814.513 kb on - strand, within SMc00246 at 1814.513 kb on - strand, within SMc00246 at 1814.532 kb on - strand, within SMc00246 at 1814.553 kb on - strand, within SMc00246 at 1814.660 kb on + strand, within SMc00246 at 1814.660 kb on + strand, within SMc00246 at 1814.660 kb on + strand, within SMc00246 at 1814.661 kb on - strand, within SMc00246 at 1814.661 kb on - strand, within SMc00246 at 1814.678 kb on + strand, within SMc00246 at 1814.678 kb on + strand, within SMc00246 at 1814.679 kb on - strand, within SMc00246
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.1 mM remove 1,811,190 - SMc00243 0.16 -0.7 1,811,263 - SMc00243 0.22 +0.6 1,811,460 + SMc00243 0.40 +0.6 1,811,460 + SMc00243 0.40 +0.4 1,811,461 - SMc00243 0.40 -1.7 1,811,461 - SMc00243 0.40 -2.4 1,811,461 - SMc00243 0.40 +1.2 1,811,462 + SMc00243 0.40 +0.3 1,811,523 + SMc00243 0.46 +2.3 1,811,524 - SMc00243 0.46 -1.3 1,811,524 - SMc00243 0.46 -2.2 1,811,620 + SMc00243 0.55 +1.0 1,811,620 + SMc00243 0.55 +1.3 1,811,621 - SMc00243 0.55 -3.4 1,811,621 - SMc00243 0.55 -0.1 1,811,621 - SMc00243 0.55 +1.2 1,811,652 - SMc00243 0.58 -0.5 1,811,652 - SMc00243 0.58 +0.2 1,811,652 - SMc00243 0.58 -1.0 1,811,685 + SMc00243 0.61 -0.1 1,811,686 - SMc00243 0.61 +0.1 1,811,686 - SMc00243 0.61 +2.5 1,811,691 + SMc00243 0.61 +0.9 1,811,691 + SMc00243 0.61 +3.6 1,811,691 + SMc00243 0.61 -2.1 1,811,691 + SMc00243 0.61 -2.3 1,811,691 + SMc00243 0.61 -0.4 1,811,691 + SMc00243 0.61 +0.5 1,811,691 + SMc00243 0.61 +2.1 1,811,692 - SMc00243 0.61 +1.6 1,811,767 + SMc00243 0.68 -0.2 1,811,767 + SMc00243 0.68 -0.8 1,811,789 + SMc00243 0.70 -0.8 1,811,790 - SMc00243 0.70 +4.6 1,811,790 - SMc00243 0.70 +0.5 1,812,266 + SMc00245 0.10 +1.5 1,812,757 - SMc00245 0.41 +0.2 1,812,821 + SMc00245 0.45 +0.4 1,812,821 + SMc00245 0.45 +0.5 1,812,892 + SMc00245 0.50 -1.7 1,812,893 - SMc00245 0.50 -0.5 1,813,025 + SMc00245 0.58 -1.2 1,813,026 - SMc00245 0.58 +2.2 1,813,030 + SMc00245 0.58 -3.1 1,813,093 + SMc00245 0.62 +0.7 1,813,095 + SMc00245 0.62 -0.6 1,813,095 + SMc00245 0.62 +1.1 1,813,095 + SMc00245 0.62 -0.8 1,813,095 + SMc00245 0.62 -0.9 1,813,095 + SMc00245 0.62 -0.1 1,813,096 - SMc00245 0.63 -0.6 1,813,096 - SMc00245 0.63 -1.2 1,813,096 - SMc00245 0.63 -2.3 1,813,296 + SMc00245 0.75 +4.2 1,813,296 + SMc00245 0.75 +0.5 1,813,296 + SMc00245 0.75 -3.2 1,813,297 - SMc00245 0.75 +0.4 1,813,297 - SMc00245 0.75 -0.8 1,813,297 - SMc00245 0.75 -0.9 1,813,586 + -3.8 1,813,586 + -0.5 1,813,586 + -1.8 1,813,587 - -0.9 1,813,637 - -3.3 1,813,789 + +0.2 1,813,811 - -1.4 1,813,827 - +0.0 1,813,887 + +1.1 1,813,887 + -0.5 1,813,887 + -0.4 1,813,916 + +0.5 1,813,917 - -1.5 1,813,929 + +0.1 1,813,930 - -0.3 1,813,930 - -1.1 1,813,935 + SMc00246 0.10 -0.5 1,813,935 + SMc00246 0.10 -0.1 1,813,936 - SMc00246 0.10 +0.4 1,813,936 - SMc00246 0.10 -1.0 1,814,009 + SMc00246 0.18 -3.9 1,814,010 - SMc00246 0.18 -1.1 1,814,010 - SMc00246 0.18 +0.8 1,814,010 - SMc00246 0.18 -1.0 1,814,010 - SMc00246 0.18 +0.7 1,814,037 - SMc00246 0.20 -0.6 1,814,240 + -1.1 1,814,259 - SMc00246 0.43 -0.5 1,814,426 + SMc00246 0.60 +1.0 1,814,427 - SMc00246 0.60 -0.1 1,814,512 + SMc00246 0.69 -0.8 1,814,513 - SMc00246 0.69 -0.5 1,814,513 - SMc00246 0.69 -0.9 1,814,532 - SMc00246 0.71 -0.4 1,814,553 - SMc00246 0.73 +1.2 1,814,660 + SMc00246 0.84 +0.1 1,814,660 + SMc00246 0.84 -0.9 1,814,660 + SMc00246 0.84 -0.2 1,814,661 - SMc00246 0.84 -0.1 1,814,661 - SMc00246 0.84 -1.1 1,814,678 + SMc00246 0.86 -0.8 1,814,678 + SMc00246 0.86 +0.5 1,814,679 - SMc00246 0.86 +4.5
Or see this region's nucleotide sequence