Strain Fitness in Sinorhizobium meliloti 1021 around SMc00245

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00243 and SMc00245 overlap by 11 nucleotidesSMc00245 and SMc00246 are separated by 146 nucleotides SMc00243: SMc00243 - ABC transporter permease, at 1,811,020 to 1,812,114 SMc00243 SMc00245: SMc00245 - ABC transporter ATP-binding protein, at 1,812,104 to 1,813,690 SMc00245 SMc00246: SMc00246 - quinone oxidoreductase, at 1,813,837 to 1,814,814 SMc00246 Position (kb) 1812 1813 1814Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1811.190 kb on - strand, within SMc00243at 1811.263 kb on - strand, within SMc00243at 1811.460 kb on + strand, within SMc00243at 1811.460 kb on + strand, within SMc00243at 1811.461 kb on - strand, within SMc00243at 1811.461 kb on - strand, within SMc00243at 1811.461 kb on - strand, within SMc00243at 1811.462 kb on + strand, within SMc00243at 1811.523 kb on + strand, within SMc00243at 1811.524 kb on - strand, within SMc00243at 1811.524 kb on - strand, within SMc00243at 1811.620 kb on + strand, within SMc00243at 1811.620 kb on + strand, within SMc00243at 1811.621 kb on - strand, within SMc00243at 1811.621 kb on - strand, within SMc00243at 1811.621 kb on - strand, within SMc00243at 1811.652 kb on - strand, within SMc00243at 1811.652 kb on - strand, within SMc00243at 1811.652 kb on - strand, within SMc00243at 1811.685 kb on + strand, within SMc00243at 1811.686 kb on - strand, within SMc00243at 1811.686 kb on - strand, within SMc00243at 1811.691 kb on + strand, within SMc00243at 1811.691 kb on + strand, within SMc00243at 1811.691 kb on + strand, within SMc00243at 1811.691 kb on + strand, within SMc00243at 1811.691 kb on + strand, within SMc00243at 1811.691 kb on + strand, within SMc00243at 1811.691 kb on + strand, within SMc00243at 1811.692 kb on - strand, within SMc00243at 1811.767 kb on + strand, within SMc00243at 1811.767 kb on + strand, within SMc00243at 1811.789 kb on + strand, within SMc00243at 1811.790 kb on - strand, within SMc00243at 1811.790 kb on - strand, within SMc00243at 1812.266 kb on + strand, within SMc00245at 1812.757 kb on - strand, within SMc00245at 1812.821 kb on + strand, within SMc00245at 1812.821 kb on + strand, within SMc00245at 1812.892 kb on + strand, within SMc00245at 1812.893 kb on - strand, within SMc00245at 1813.025 kb on + strand, within SMc00245at 1813.026 kb on - strand, within SMc00245at 1813.030 kb on + strand, within SMc00245at 1813.093 kb on + strand, within SMc00245at 1813.095 kb on + strand, within SMc00245at 1813.095 kb on + strand, within SMc00245at 1813.095 kb on + strand, within SMc00245at 1813.095 kb on + strand, within SMc00245at 1813.095 kb on + strand, within SMc00245at 1813.096 kb on - strand, within SMc00245at 1813.096 kb on - strand, within SMc00245at 1813.096 kb on - strand, within SMc00245at 1813.296 kb on + strand, within SMc00245at 1813.296 kb on + strand, within SMc00245at 1813.296 kb on + strand, within SMc00245at 1813.297 kb on - strand, within SMc00245at 1813.297 kb on - strand, within SMc00245at 1813.297 kb on - strand, within SMc00245at 1813.586 kb on + strandat 1813.586 kb on + strandat 1813.586 kb on + strandat 1813.587 kb on - strandat 1813.637 kb on - strandat 1813.789 kb on + strandat 1813.811 kb on - strandat 1813.827 kb on - strandat 1813.887 kb on + strandat 1813.887 kb on + strandat 1813.887 kb on + strandat 1813.916 kb on + strandat 1813.917 kb on - strandat 1813.929 kb on + strandat 1813.930 kb on - strandat 1813.930 kb on - strandat 1813.935 kb on + strand, within SMc00246at 1813.935 kb on + strand, within SMc00246at 1813.936 kb on - strand, within SMc00246at 1813.936 kb on - strand, within SMc00246at 1814.009 kb on + strand, within SMc00246at 1814.010 kb on - strand, within SMc00246at 1814.010 kb on - strand, within SMc00246at 1814.010 kb on - strand, within SMc00246at 1814.010 kb on - strand, within SMc00246at 1814.037 kb on - strand, within SMc00246at 1814.240 kb on + strandat 1814.259 kb on - strand, within SMc00246at 1814.426 kb on + strand, within SMc00246at 1814.427 kb on - strand, within SMc00246at 1814.512 kb on + strand, within SMc00246at 1814.513 kb on - strand, within SMc00246at 1814.513 kb on - strand, within SMc00246at 1814.532 kb on - strand, within SMc00246at 1814.553 kb on - strand, within SMc00246at 1814.660 kb on + strand, within SMc00246at 1814.660 kb on + strand, within SMc00246at 1814.660 kb on + strand, within SMc00246at 1814.661 kb on - strand, within SMc00246at 1814.661 kb on - strand, within SMc00246at 1814.678 kb on + strand, within SMc00246at 1814.678 kb on + strand, within SMc00246at 1814.679 kb on - strand, within SMc00246

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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1,811,190 - SMc00243 0.16 -0.7
1,811,263 - SMc00243 0.22 +0.6
1,811,460 + SMc00243 0.40 +0.6
1,811,460 + SMc00243 0.40 +0.4
1,811,461 - SMc00243 0.40 -1.7
1,811,461 - SMc00243 0.40 -2.4
1,811,461 - SMc00243 0.40 +1.2
1,811,462 + SMc00243 0.40 +0.3
1,811,523 + SMc00243 0.46 +2.3
1,811,524 - SMc00243 0.46 -1.3
1,811,524 - SMc00243 0.46 -2.2
1,811,620 + SMc00243 0.55 +1.0
1,811,620 + SMc00243 0.55 +1.3
1,811,621 - SMc00243 0.55 -3.4
1,811,621 - SMc00243 0.55 -0.1
1,811,621 - SMc00243 0.55 +1.2
1,811,652 - SMc00243 0.58 -0.5
1,811,652 - SMc00243 0.58 +0.2
1,811,652 - SMc00243 0.58 -1.0
1,811,685 + SMc00243 0.61 -0.1
1,811,686 - SMc00243 0.61 +0.1
1,811,686 - SMc00243 0.61 +2.5
1,811,691 + SMc00243 0.61 +0.9
1,811,691 + SMc00243 0.61 +3.6
1,811,691 + SMc00243 0.61 -2.1
1,811,691 + SMc00243 0.61 -2.3
1,811,691 + SMc00243 0.61 -0.4
1,811,691 + SMc00243 0.61 +0.5
1,811,691 + SMc00243 0.61 +2.1
1,811,692 - SMc00243 0.61 +1.6
1,811,767 + SMc00243 0.68 -0.2
1,811,767 + SMc00243 0.68 -0.8
1,811,789 + SMc00243 0.70 -0.8
1,811,790 - SMc00243 0.70 +4.6
1,811,790 - SMc00243 0.70 +0.5
1,812,266 + SMc00245 0.10 +1.5
1,812,757 - SMc00245 0.41 +0.2
1,812,821 + SMc00245 0.45 +0.4
1,812,821 + SMc00245 0.45 +0.5
1,812,892 + SMc00245 0.50 -1.7
1,812,893 - SMc00245 0.50 -0.5
1,813,025 + SMc00245 0.58 -1.2
1,813,026 - SMc00245 0.58 +2.2
1,813,030 + SMc00245 0.58 -3.1
1,813,093 + SMc00245 0.62 +0.7
1,813,095 + SMc00245 0.62 -0.6
1,813,095 + SMc00245 0.62 +1.1
1,813,095 + SMc00245 0.62 -0.8
1,813,095 + SMc00245 0.62 -0.9
1,813,095 + SMc00245 0.62 -0.1
1,813,096 - SMc00245 0.63 -0.6
1,813,096 - SMc00245 0.63 -1.2
1,813,096 - SMc00245 0.63 -2.3
1,813,296 + SMc00245 0.75 +4.2
1,813,296 + SMc00245 0.75 +0.5
1,813,296 + SMc00245 0.75 -3.2
1,813,297 - SMc00245 0.75 +0.4
1,813,297 - SMc00245 0.75 -0.8
1,813,297 - SMc00245 0.75 -0.9
1,813,586 + -3.8
1,813,586 + -0.5
1,813,586 + -1.8
1,813,587 - -0.9
1,813,637 - -3.3
1,813,789 + +0.2
1,813,811 - -1.4
1,813,827 - +0.0
1,813,887 + +1.1
1,813,887 + -0.5
1,813,887 + -0.4
1,813,916 + +0.5
1,813,917 - -1.5
1,813,929 + +0.1
1,813,930 - -0.3
1,813,930 - -1.1
1,813,935 + SMc00246 0.10 -0.5
1,813,935 + SMc00246 0.10 -0.1
1,813,936 - SMc00246 0.10 +0.4
1,813,936 - SMc00246 0.10 -1.0
1,814,009 + SMc00246 0.18 -3.9
1,814,010 - SMc00246 0.18 -1.1
1,814,010 - SMc00246 0.18 +0.8
1,814,010 - SMc00246 0.18 -1.0
1,814,010 - SMc00246 0.18 +0.7
1,814,037 - SMc00246 0.20 -0.6
1,814,240 + -1.1
1,814,259 - SMc00246 0.43 -0.5
1,814,426 + SMc00246 0.60 +1.0
1,814,427 - SMc00246 0.60 -0.1
1,814,512 + SMc00246 0.69 -0.8
1,814,513 - SMc00246 0.69 -0.5
1,814,513 - SMc00246 0.69 -0.9
1,814,532 - SMc00246 0.71 -0.4
1,814,553 - SMc00246 0.73 +1.2
1,814,660 + SMc00246 0.84 +0.1
1,814,660 + SMc00246 0.84 -0.9
1,814,660 + SMc00246 0.84 -0.2
1,814,661 - SMc00246 0.84 -0.1
1,814,661 - SMc00246 0.84 -1.1
1,814,678 + SMc00246 0.86 -0.8
1,814,678 + SMc00246 0.86 +0.5
1,814,679 - SMc00246 0.86 +4.5

Or see this region's nucleotide sequence