Experiment: Chlorite 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00069 and SMc00002 are separated by 141 nucleotides SMc00002 and SMc00003 are separated by 205 nucleotides SMc00003 and SMc00005 are separated by 200 nucleotides
SMc00069: SMc00069 - pyridoxamine 5'-phosphate oxidase, at 983,810 to 984,430
SMc00069
SMc00002: SMc00002 - hypothetical protein, at 984,572 to 985,027
SMc00002
SMc00003: SMc00003 - chaperone protein, at 985,233 to 986,288
SMc00003
SMc00005: SMc00005 - enoyl-ACP reductase, at 986,489 to 987,307
SMc00005
Position (kb)
985
986
987 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 984.431 kb on - strand at 984.501 kb on + strand at 984.502 kb on - strand at 984.502 kb on - strand at 984.505 kb on - strand at 984.505 kb on - strand at 984.505 kb on - strand at 984.505 kb on - strand at 984.582 kb on + strand at 984.582 kb on + strand at 984.583 kb on - strand at 984.583 kb on - strand at 984.583 kb on - strand at 984.583 kb on - strand at 984.999 kb on - strand at 984.999 kb on - strand at 984.999 kb on - strand at 985.038 kb on + strand at 985.045 kb on - strand at 985.045 kb on - strand at 985.045 kb on - strand at 985.119 kb on - strand at 985.123 kb on - strand at 985.257 kb on + strand at 985.258 kb on - strand at 985.398 kb on + strand, within SMc00003 at 985.752 kb on - strand, within SMc00003 at 985.939 kb on - strand, within SMc00003 at 986.313 kb on + strand at 986.313 kb on + strand at 986.314 kb on - strand at 986.325 kb on + strand at 986.325 kb on + strand at 986.325 kb on + strand at 986.325 kb on + strand at 986.368 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.1 mM remove 984,431 - +0.3 984,501 + -1.8 984,502 - +0.1 984,502 - +0.9 984,505 - +2.0 984,505 - -2.2 984,505 - +0.6 984,505 - +2.2 984,582 + +0.6 984,582 + -0.5 984,583 - +0.6 984,583 - -1.4 984,583 - +0.9 984,583 - +0.2 984,999 - -0.3 984,999 - -0.7 984,999 - +0.4 985,038 + +0.6 985,045 - +2.1 985,045 - +0.6 985,045 - +0.5 985,119 - -0.3 985,123 - -0.4 985,257 + +1.5 985,258 - +0.3 985,398 + SMc00003 0.16 -2.6 985,752 - SMc00003 0.49 -1.4 985,939 - SMc00003 0.67 +0.6 986,313 + +0.5 986,313 + -0.2 986,314 - -2.6 986,325 + -1.3 986,325 + -3.2 986,325 + -1.8 986,325 + -2.9 986,368 + -1.4
Or see this region's nucleotide sequence