Strain Fitness in Sinorhizobium meliloti 1021 around SMa1688

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1684 and SMa1686 overlap by 8 nucleotidesSMa1686 and SMa1688 are separated by 81 nucleotidesSMa1688 and SMa1691 are separated by 542 nucleotides SMa1684: SMa1684 - Sensory histidine kinase, at 948,970 to 950,853 SMa1684 SMa1686: SMa1686 - Two-component response regulator, at 950,846 to 951,487 SMa1686 SMa1688: SMa1688 - Two-component response regulator, at 951,569 to 951,985 SMa1688 SMa1691: SMa1691 - Cation transport ATPase, at 952,528 to 953,982 SMa1691 Position (kb) 951 952Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 950.707 kb on + strandat 950.708 kb on - strandat 950.708 kb on - strandat 950.770 kb on + strandat 950.771 kb on - strandat 950.877 kb on + strandat 950.878 kb on - strandat 950.878 kb on - strandat 950.948 kb on + strand, within SMa1686at 950.949 kb on - strand, within SMa1686at 950.949 kb on - strand, within SMa1686at 951.245 kb on - strand, within SMa1686at 951.297 kb on + strand, within SMa1686at 951.297 kb on + strand, within SMa1686at 951.328 kb on + strand, within SMa1686at 951.489 kb on + strandat 951.489 kb on + strandat 951.490 kb on - strandat 951.490 kb on - strandat 951.490 kb on - strandat 951.543 kb on + strandat 951.621 kb on + strand, within SMa1688at 951.622 kb on - strand, within SMa1688at 951.742 kb on - strand, within SMa1688at 951.777 kb on + strand, within SMa1688at 951.777 kb on + strand, within SMa1688at 952.094 kb on + strandat 952.095 kb on - strandat 952.136 kb on - strandat 952.406 kb on - strandat 952.415 kb on - strandat 952.415 kb on - strandat 952.415 kb on - strandat 952.415 kb on - strandat 952.425 kb on + strandat 952.524 kb on + strandat 952.582 kb on + strandat 952.582 kb on + strandat 952.582 kb on + strandat 952.624 kb on + strandat 952.624 kb on + strandat 952.625 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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950,707 + +0.5
950,708 - +1.7
950,708 - +0.9
950,770 + -2.1
950,771 - -0.0
950,877 + +1.5
950,878 - +0.3
950,878 - +0.2
950,948 + SMa1686 0.16 +2.3
950,949 - SMa1686 0.16 -0.6
950,949 - SMa1686 0.16 -0.6
951,245 - SMa1686 0.62 -0.7
951,297 + SMa1686 0.70 +3.3
951,297 + SMa1686 0.70 -0.8
951,328 + SMa1686 0.75 +1.5
951,489 + +0.6
951,489 + -0.3
951,490 - +0.3
951,490 - -0.5
951,490 - -0.7
951,543 + -0.3
951,621 + SMa1688 0.12 -2.4
951,622 - SMa1688 0.13 -0.8
951,742 - SMa1688 0.41 +0.2
951,777 + SMa1688 0.50 +0.5
951,777 + SMa1688 0.50 -2.1
952,094 + +0.9
952,095 - -2.9
952,136 - -3.2
952,406 - +0.7
952,415 - -0.3
952,415 - -0.8
952,415 - +1.4
952,415 - -0.2
952,425 + +0.2
952,524 + +0.0
952,582 + +4.0
952,582 + -0.1
952,582 + -0.7
952,624 + +0.1
952,624 + -1.9
952,625 - -0.1

Or see this region's nucleotide sequence