Experiment: Chlorite 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1684 and SMa1686 overlap by 8 nucleotides SMa1686 and SMa1688 are separated by 81 nucleotides SMa1688 and SMa1691 are separated by 542 nucleotides
SMa1684: SMa1684 - Sensory histidine kinase, at 948,970 to 950,853
SMa1684
SMa1686: SMa1686 - Two-component response regulator, at 950,846 to 951,487
SMa1686
SMa1688: SMa1688 - Two-component response regulator, at 951,569 to 951,985
SMa1688
SMa1691: SMa1691 - Cation transport ATPase, at 952,528 to 953,982
SMa1691
Position (kb)
951
952 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 950.707 kb on + strand at 950.708 kb on - strand at 950.708 kb on - strand at 950.770 kb on + strand at 950.771 kb on - strand at 950.877 kb on + strand at 950.878 kb on - strand at 950.878 kb on - strand at 950.948 kb on + strand, within SMa1686 at 950.949 kb on - strand, within SMa1686 at 950.949 kb on - strand, within SMa1686 at 951.245 kb on - strand, within SMa1686 at 951.297 kb on + strand, within SMa1686 at 951.297 kb on + strand, within SMa1686 at 951.328 kb on + strand, within SMa1686 at 951.489 kb on + strand at 951.489 kb on + strand at 951.490 kb on - strand at 951.490 kb on - strand at 951.490 kb on - strand at 951.543 kb on + strand at 951.621 kb on + strand, within SMa1688 at 951.622 kb on - strand, within SMa1688 at 951.742 kb on - strand, within SMa1688 at 951.777 kb on + strand, within SMa1688 at 951.777 kb on + strand, within SMa1688 at 952.094 kb on + strand at 952.095 kb on - strand at 952.136 kb on - strand at 952.406 kb on - strand at 952.415 kb on - strand at 952.415 kb on - strand at 952.415 kb on - strand at 952.415 kb on - strand at 952.425 kb on + strand at 952.524 kb on + strand at 952.582 kb on + strand at 952.582 kb on + strand at 952.582 kb on + strand at 952.624 kb on + strand at 952.624 kb on + strand at 952.625 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.1 mM remove 950,707 + +0.5 950,708 - +1.7 950,708 - +0.9 950,770 + -2.1 950,771 - -0.0 950,877 + +1.5 950,878 - +0.3 950,878 - +0.2 950,948 + SMa1686 0.16 +2.3 950,949 - SMa1686 0.16 -0.6 950,949 - SMa1686 0.16 -0.6 951,245 - SMa1686 0.62 -0.7 951,297 + SMa1686 0.70 +3.3 951,297 + SMa1686 0.70 -0.8 951,328 + SMa1686 0.75 +1.5 951,489 + +0.6 951,489 + -0.3 951,490 - +0.3 951,490 - -0.5 951,490 - -0.7 951,543 + -0.3 951,621 + SMa1688 0.12 -2.4 951,622 - SMa1688 0.13 -0.8 951,742 - SMa1688 0.41 +0.2 951,777 + SMa1688 0.50 +0.5 951,777 + SMa1688 0.50 -2.1 952,094 + +0.9 952,095 - -2.9 952,136 - -3.2 952,406 - +0.7 952,415 - -0.3 952,415 - -0.8 952,415 - +1.4 952,415 - -0.2 952,425 + +0.2 952,524 + +0.0 952,582 + +4.0 952,582 + -0.1 952,582 + -0.7 952,624 + +0.1 952,624 + -1.9 952,625 - -0.1
Or see this region's nucleotide sequence