Experiment: Chlorite 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1620 and SMa1623 are separated by 149 nucleotides SMa1623 and SMa1625 are separated by 217 nucleotides SMa1625 and SMa1626 are separated by 104 nucleotides SMa1626 and SMa1629 are separated by 140 nucleotides
SMa1620: SMa1620 - integrase/recombinase, at 903,254 to 904,243
SMa1620
SMa1623: SMa1623 - transposase, fragment, at 904,393 to 904,767
SMa1623
SMa1625: SMa1625 - LysR family transcriptional regulator, at 904,985 to 905,908
SMa1625
SMa1626: SMa1626 - hypothetical protein, at 906,013 to 906,672
SMa1626
SMa1629: SMa1629 - short chain dehydrogenase, at 906,813 to 907,592
SMa1629
Position (kb) 904
905
906 Strain fitness (log2 ratio) -2
-1
0
1
2 at 904.315 kb on + strand at 904.319 kb on + strand at 904.819 kb on + strand at 904.891 kb on + strand at 904.892 kb on - strand at 904.987 kb on - strand at 905.086 kb on + strand, within SMa1625 at 905.086 kb on + strand, within SMa1625 at 905.231 kb on + strand, within SMa1625 at 905.964 kb on + strand at 905.965 kb on - strand at 906.012 kb on + strand at 906.363 kb on + strand, within SMa1626 at 906.363 kb on + strand, within SMa1626 at 906.363 kb on + strand, within SMa1626 at 906.364 kb on - strand, within SMa1626 at 906.367 kb on + strand, within SMa1626 at 906.368 kb on - strand, within SMa1626 at 906.671 kb on - strand at 906.814 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.1 mM remove 904,315 + +2.6 904,319 + -0.3 904,819 + -0.1 904,891 + -1.2 904,892 - -1.9 904,987 - +0.7 905,086 + SMa1625 0.11 +1.3 905,086 + SMa1625 0.11 +0.0 905,231 + SMa1625 0.27 +1.5 905,964 + -1.4 905,965 - -0.4 906,012 + +1.4 906,363 + SMa1626 0.53 +0.2 906,363 + SMa1626 0.53 -0.3 906,363 + SMa1626 0.53 -0.4 906,364 - SMa1626 0.53 +0.6 906,367 + SMa1626 0.54 +0.6 906,368 - SMa1626 0.54 -0.7 906,671 - -0.2 906,814 + +0.9
Or see this region's nucleotide sequence