Experiment: Chlorite 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1427 and SMa1428 are separated by 249 nucleotides SMa1428 and SMa1430 are separated by 1 nucleotides SMa1430 and SMa1431 are separated by 47 nucleotides SMa1431 and SMa1434 are separated by 172 nucleotides
SMa1427: SMa1427 - ABC transporter substrate-binding protein, at 785,430 to 786,548
SMa1427
SMa1428: SMa1428 - TetR/AcrR family transcriptional regulator, at 786,798 to 787,457
SMa1428
SMa1430: SMa1430 - Dehydrogenase, Zn-dependent, at 787,459 to 788,475
SMa1430
SMa1431: SMa1431 - hypothetical protein, at 788,523 to 789,041
SMa1431
SMa1434: SMa1434 - ABC transporter ATP-binding protein, at 789,214 to 790,866
SMa1434
Position (kb) 787
788
789 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 786.755 kb on - strand at 786.976 kb on - strand, within SMa1428 at 786.982 kb on - strand, within SMa1428 at 787.029 kb on + strand, within SMa1428 at 787.029 kb on + strand, within SMa1428 at 787.029 kb on + strand, within SMa1428 at 787.029 kb on + strand, within SMa1428 at 787.123 kb on - strand at 787.123 kb on - strand, within SMa1428 at 787.125 kb on + strand, within SMa1428 at 787.125 kb on + strand, within SMa1428 at 787.126 kb on - strand, within SMa1428 at 787.335 kb on + strand, within SMa1428 at 787.335 kb on + strand, within SMa1428 at 787.336 kb on - strand, within SMa1428 at 787.336 kb on - strand, within SMa1428 at 787.338 kb on + strand, within SMa1428 at 787.338 kb on + strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.426 kb on + strand at 787.426 kb on + strand at 787.427 kb on - strand at 787.427 kb on - strand at 787.427 kb on - strand at 787.427 kb on - strand at 787.523 kb on + strand at 787.524 kb on + strand at 787.671 kb on - strand, within SMa1430 at 788.202 kb on + strand, within SMa1430 at 788.260 kb on - strand, within SMa1430 at 788.373 kb on + strand, within SMa1430 at 788.423 kb on + strand at 788.423 kb on + strand at 788.423 kb on + strand at 788.461 kb on + strand at 788.462 kb on - strand at 788.462 kb on - strand at 788.462 kb on - strand at 788.573 kb on - strand at 788.573 kb on - strand at 788.595 kb on + strand, within SMa1431 at 788.595 kb on + strand, within SMa1431 at 788.596 kb on - strand, within SMa1431 at 788.596 kb on - strand, within SMa1431 at 788.596 kb on - strand, within SMa1431 at 788.633 kb on - strand, within SMa1431 at 788.774 kb on + strand, within SMa1431 at 788.815 kb on + strand, within SMa1431 at 788.862 kb on + strand, within SMa1431 at 788.862 kb on + strand, within SMa1431 at 788.862 kb on + strand, within SMa1431 at 789.078 kb on - strand at 789.215 kb on + strand at 789.216 kb on - strand at 789.287 kb on + strand at 789.287 kb on + strand at 789.288 kb on - strand at 789.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.1 mM remove 786,755 - -3.8 786,976 - SMa1428 0.27 +0.1 786,982 - SMa1428 0.28 -0.2 787,029 + SMa1428 0.35 +0.7 787,029 + SMa1428 0.35 +1.7 787,029 + SMa1428 0.35 -0.7 787,029 + SMa1428 0.35 -0.7 787,123 - +0.7 787,123 - SMa1428 0.49 -3.1 787,125 + SMa1428 0.50 +0.3 787,125 + SMa1428 0.50 -0.8 787,126 - SMa1428 0.50 +1.5 787,335 + SMa1428 0.81 -1.7 787,335 + SMa1428 0.81 -0.7 787,336 - SMa1428 0.82 +1.2 787,336 - SMa1428 0.82 +2.1 787,338 + SMa1428 0.82 +0.2 787,338 + SMa1428 0.82 +1.3 787,339 - SMa1428 0.82 -0.8 787,339 - SMa1428 0.82 -0.8 787,339 - SMa1428 0.82 +0.3 787,339 - SMa1428 0.82 +0.5 787,339 - SMa1428 0.82 -0.7 787,339 - SMa1428 0.82 +0.7 787,426 + +0.6 787,426 + -0.1 787,427 - +2.0 787,427 - +0.5 787,427 - -0.6 787,427 - +1.0 787,523 + +0.2 787,524 + -1.8 787,671 - SMa1430 0.21 -0.6 788,202 + SMa1430 0.73 -1.7 788,260 - SMa1430 0.79 -0.5 788,373 + SMa1430 0.90 -1.6 788,423 + -1.7 788,423 + -1.1 788,423 + -1.3 788,461 + -1.3 788,462 - -2.3 788,462 - -0.3 788,462 - +0.1 788,573 - -4.8 788,573 - -4.1 788,595 + SMa1431 0.14 -0.4 788,595 + SMa1431 0.14 +0.7 788,596 - SMa1431 0.14 +1.8 788,596 - SMa1431 0.14 -1.1 788,596 - SMa1431 0.14 -0.9 788,633 - SMa1431 0.21 +0.7 788,774 + SMa1431 0.48 -0.1 788,815 + SMa1431 0.56 -0.1 788,862 + SMa1431 0.65 +0.2 788,862 + SMa1431 0.65 +2.0 788,862 + SMa1431 0.65 -0.2 789,078 - -3.2 789,215 + -0.4 789,216 - +0.5 789,287 + -0.2 789,287 + -0.5 789,288 - +0.3 789,288 - +0.3
Or see this region's nucleotide sequence