Experiment: Chlorite 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0299 and SMa0300 overlap by 4 nucleotides SMa0300 and SMa0301 overlap by 4 nucleotides SMa0301 and SMa0302 are separated by 69 nucleotides
SMa0299: SMa0299 - ABC transporter permease, at 164,858 to 165,745
SMa0299
SMa0300: SMa0300 - ABC transporter permease, at 165,742 to 166,695
SMa0300
SMa0301: SMa0301 - hypothetical protein, at 166,692 to 167,360
SMa0301
SMa0302: SMa0302 - ABC transporter substrate-binding protein, at 167,430 to 168,956
SMa0302
Position (kb) 166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 165.736 kb on + strand at 165.813 kb on - strand at 165.813 kb on - strand at 165.902 kb on + strand, within SMa0300 at 165.903 kb on - strand, within SMa0300 at 166.055 kb on + strand, within SMa0300 at 166.055 kb on + strand, within SMa0300 at 166.055 kb on + strand, within SMa0300 at 166.055 kb on + strand, within SMa0300 at 166.056 kb on - strand, within SMa0300 at 166.107 kb on - strand, within SMa0300 at 166.119 kb on + strand, within SMa0300 at 166.120 kb on - strand, within SMa0300 at 166.120 kb on - strand, within SMa0300 at 166.364 kb on + strand, within SMa0300 at 166.365 kb on - strand, within SMa0300 at 166.496 kb on + strand, within SMa0300 at 166.685 kb on - strand at 166.685 kb on - strand at 166.685 kb on - strand at 166.685 kb on - strand at 166.789 kb on + strand, within SMa0301 at 166.789 kb on + strand, within SMa0301 at 166.789 kb on + strand, within SMa0301 at 166.790 kb on - strand, within SMa0301 at 166.790 kb on - strand, within SMa0301 at 166.790 kb on - strand, within SMa0301 at 166.925 kb on - strand, within SMa0301 at 166.927 kb on + strand, within SMa0301 at 167.000 kb on + strand, within SMa0301 at 167.001 kb on - strand, within SMa0301 at 167.034 kb on - strand, within SMa0301 at 167.056 kb on + strand, within SMa0301 at 167.057 kb on - strand, within SMa0301 at 167.101 kb on + strand, within SMa0301 at 167.101 kb on + strand, within SMa0301 at 167.102 kb on - strand, within SMa0301 at 167.366 kb on + strand at 167.366 kb on + strand at 167.367 kb on - strand at 167.456 kb on - strand at 167.456 kb on - strand at 167.488 kb on + strand at 167.546 kb on + strand at 167.734 kb on + strand, within SMa0302 at 167.734 kb on + strand, within SMa0302 at 167.735 kb on - strand, within SMa0302 at 167.776 kb on + strand, within SMa0302 at 167.839 kb on + strand, within SMa0302 at 167.884 kb on + strand, within SMa0302 at 167.884 kb on + strand, within SMa0302 at 168.123 kb on + strand, within SMa0302 at 168.124 kb on - strand, within SMa0302 at 168.133 kb on + strand, within SMa0302 at 168.134 kb on - strand, within SMa0302 at 168.263 kb on + strand, within SMa0302 at 168.303 kb on - strand, within SMa0302
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.1 mM remove 165,736 + -3.2 165,813 - -1.4 165,813 - -1.7 165,902 + SMa0300 0.17 +0.8 165,903 - SMa0300 0.17 -2.4 166,055 + SMa0300 0.33 -0.3 166,055 + SMa0300 0.33 +2.4 166,055 + SMa0300 0.33 -0.5 166,055 + SMa0300 0.33 -1.2 166,056 - SMa0300 0.33 +2.7 166,107 - SMa0300 0.38 +0.6 166,119 + SMa0300 0.40 +1.5 166,120 - SMa0300 0.40 +0.7 166,120 - SMa0300 0.40 +0.6 166,364 + SMa0300 0.65 -1.8 166,365 - SMa0300 0.65 -1.6 166,496 + SMa0300 0.79 +2.1 166,685 - -0.9 166,685 - -2.3 166,685 - +1.3 166,685 - +0.2 166,789 + SMa0301 0.14 +1.2 166,789 + SMa0301 0.14 -0.4 166,789 + SMa0301 0.14 -0.4 166,790 - SMa0301 0.15 -0.5 166,790 - SMa0301 0.15 +0.8 166,790 - SMa0301 0.15 +0.8 166,925 - SMa0301 0.35 -1.3 166,927 + SMa0301 0.35 +0.7 167,000 + SMa0301 0.46 +0.9 167,001 - SMa0301 0.46 -1.6 167,034 - SMa0301 0.51 +0.7 167,056 + SMa0301 0.54 -0.3 167,057 - SMa0301 0.55 -2.1 167,101 + SMa0301 0.61 -1.0 167,101 + SMa0301 0.61 -2.3 167,102 - SMa0301 0.61 -0.6 167,366 + +4.8 167,366 + +1.2 167,367 - +0.0 167,456 - -0.1 167,456 - +0.8 167,488 + -1.0 167,546 + -0.8 167,734 + SMa0302 0.20 -0.1 167,734 + SMa0302 0.20 +1.0 167,735 - SMa0302 0.20 +0.2 167,776 + SMa0302 0.23 +0.2 167,839 + SMa0302 0.27 -0.3 167,884 + SMa0302 0.30 +1.1 167,884 + SMa0302 0.30 +0.2 168,123 + SMa0302 0.45 -2.0 168,124 - SMa0302 0.45 +0.2 168,133 + SMa0302 0.46 -0.6 168,134 - SMa0302 0.46 +0.0 168,263 + SMa0302 0.55 -0.2 168,303 - SMa0302 0.57 +3.7
Or see this region's nucleotide sequence