Strain Fitness in Sinorhizobium meliloti 1021 around SMa0062

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0060 and SMa0062 are separated by 210 nucleotidesSMa0062 and SMa0063 are separated by 129 nucleotidesSMa0063 and SMa0064 are separated by 2 nucleotides SMa0060: SMa0060 - gluconolactonase, at 31,488 to 32,423 SMa0060 SMa0062: SMa0062 - GntR family transcriptional regulator, at 32,634 to 33,323 SMa0062 SMa0063: SMa0063 - GntR family transcriptional regulator, at 33,453 to 34,187 SMa0063 SMa0064: SMa0064 - dehydratase/enolase, at 34,190 to 35,392 SMa0064 Position (kb) 32 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 31.645 kb on + strand, within SMa0060at 31.646 kb on - strand, within SMa0060at 31.646 kb on - strand, within SMa0060at 31.891 kb on + strand, within SMa0060at 31.891 kb on + strand, within SMa0060at 31.892 kb on - strand, within SMa0060at 31.966 kb on + strand, within SMa0060at 31.966 kb on + strand, within SMa0060at 31.966 kb on + strand, within SMa0060at 31.967 kb on - strand, within SMa0060at 31.973 kb on + strand, within SMa0060at 32.014 kb on + strand, within SMa0060at 32.039 kb on + strand, within SMa0060at 32.040 kb on - strand, within SMa0060at 32.338 kb on + strandat 32.338 kb on + strandat 32.515 kb on + strandat 32.616 kb on - strandat 32.620 kb on - strandat 32.769 kb on - strand, within SMa0062at 32.951 kb on - strand, within SMa0062at 33.049 kb on - strand, within SMa0062at 33.107 kb on + strand, within SMa0062at 33.107 kb on + strand, within SMa0062at 33.108 kb on - strand, within SMa0062at 33.288 kb on + strandat 33.351 kb on + strandat 33.351 kb on + strandat 33.351 kb on + strandat 33.352 kb on - strandat 33.616 kb on + strand, within SMa0063at 33.642 kb on + strand, within SMa0063at 33.643 kb on - strand, within SMa0063at 34.010 kb on + strand, within SMa0063at 34.064 kb on + strand, within SMa0063at 34.157 kb on - strandat 34.183 kb on - strandat 34.238 kb on - strandat 34.319 kb on + strand, within SMa0064at 34.319 kb on + strand, within SMa0064at 34.319 kb on + strand, within SMa0064at 34.320 kb on - strand, within SMa0064at 34.320 kb on - strand, within SMa0064at 34.320 kb on - strand, within SMa0064at 34.320 kb on - strand, within SMa0064at 34.320 kb on - strand, within SMa0064at 34.320 kb on - strand, within SMa0064at 34.320 kb on - strand, within SMa0064

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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31,645 + SMa0060 0.17 +1.4
31,646 - SMa0060 0.17 +3.1
31,646 - SMa0060 0.17 +0.9
31,891 + SMa0060 0.43 +0.7
31,891 + SMa0060 0.43 +0.6
31,892 - SMa0060 0.43 -1.9
31,966 + SMa0060 0.51 +0.4
31,966 + SMa0060 0.51 -0.3
31,966 + SMa0060 0.51 +0.5
31,967 - SMa0060 0.51 -0.6
31,973 + SMa0060 0.52 +0.8
32,014 + SMa0060 0.56 -0.1
32,039 + SMa0060 0.59 +1.7
32,040 - SMa0060 0.59 -1.3
32,338 + +0.1
32,338 + +1.0
32,515 + -0.6
32,616 - +0.7
32,620 - -0.4
32,769 - SMa0062 0.20 -0.4
32,951 - SMa0062 0.46 +0.3
33,049 - SMa0062 0.60 +0.2
33,107 + SMa0062 0.69 +0.8
33,107 + SMa0062 0.69 -1.5
33,108 - SMa0062 0.69 +0.1
33,288 + -3.6
33,351 + +0.2
33,351 + -2.5
33,351 + -1.2
33,352 - +0.6
33,616 + SMa0063 0.22 -0.1
33,642 + SMa0063 0.26 +2.5
33,643 - SMa0063 0.26 +0.5
34,010 + SMa0063 0.76 +0.7
34,064 + SMa0063 0.83 +0.4
34,157 - -0.7
34,183 - -0.5
34,238 - +0.7
34,319 + SMa0064 0.11 -0.3
34,319 + SMa0064 0.11 -0.6
34,319 + SMa0064 0.11 -0.2
34,320 - SMa0064 0.11 +0.2
34,320 - SMa0064 0.11 -0.2
34,320 - SMa0064 0.11 -0.9
34,320 - SMa0064 0.11 +0.2
34,320 - SMa0064 0.11 -0.3
34,320 - SMa0064 0.11 -0.4
34,320 - SMa0064 0.11 -0.3

Or see this region's nucleotide sequence