Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21528

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21526 and SM_b21527 are separated by 88 nucleotidesSM_b21527 and SM_b21528 overlap by 8 nucleotidesSM_b21528 and SM_b21670 are separated by 116 nucleotidesSM_b21670 and SM_b21529 are separated by 24 nucleotides SM_b21526: SM_b21526 - taurine uptake ABC transporter substrate-binding protein precursor, at 1,050,954 to 1,051,973 _b21526 SM_b21527: SM_b21527 - taurin uptake ABC transporter ATP-binding protein, at 1,052,062 to 1,052,874 _b21527 SM_b21528: SM_b21528 - taurine uptake ABC transporter permease, at 1,052,867 to 1,053,694 _b21528 SM_b21670: SM_b21670 - hypothetical protein, at 1,053,811 to 1,054,197 _b21670 SM_b21529: SM_b21529 - taurine dehydrogenase, at 1,054,222 to 1,055,622 _b21529 Position (kb) 1052 1053 1054Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1051.926 kb on + strandat 1051.927 kb on - strandat 1051.927 kb on - strandat 1051.950 kb on + strandat 1052.356 kb on - strand, within SM_b21527at 1052.464 kb on + strand, within SM_b21527at 1052.465 kb on - strand, within SM_b21527at 1052.719 kb on - strand, within SM_b21527at 1052.719 kb on - strand, within SM_b21527at 1052.722 kb on + strand, within SM_b21527at 1052.722 kb on + strand, within SM_b21527at 1052.722 kb on + strand, within SM_b21527at 1052.723 kb on - strand, within SM_b21527at 1052.723 kb on - strand, within SM_b21527at 1052.723 kb on - strand, within SM_b21527at 1052.723 kb on - strand, within SM_b21527at 1052.828 kb on - strandat 1052.915 kb on + strandat 1052.915 kb on + strandat 1052.915 kb on + strandat 1052.915 kb on + strandat 1052.917 kb on - strandat 1053.106 kb on + strand, within SM_b21528at 1053.106 kb on + strand, within SM_b21528at 1053.106 kb on + strand, within SM_b21528at 1053.107 kb on - strand, within SM_b21528at 1053.107 kb on - strand, within SM_b21528at 1053.317 kb on + strand, within SM_b21528at 1053.318 kb on - strand, within SM_b21528at 1053.318 kb on - strand, within SM_b21528at 1053.318 kb on - strand, within SM_b21528at 1053.318 kb on - strand, within SM_b21528at 1053.465 kb on + strand, within SM_b21528at 1053.466 kb on - strand, within SM_b21528at 1053.466 kb on - strand, within SM_b21528at 1053.466 kb on - strand, within SM_b21528at 1053.590 kb on - strand, within SM_b21528at 1053.758 kb on + strandat 1053.758 kb on + strandat 1053.981 kb on - strand, within SM_b21670at 1053.981 kb on - strand, within SM_b21670at 1054.083 kb on + strand, within SM_b21670at 1054.083 kb on + strand, within SM_b21670at 1054.084 kb on - strand, within SM_b21670at 1054.276 kb on + strandat 1054.276 kb on + strandat 1054.276 kb on + strandat 1054.277 kb on - strandat 1054.277 kb on - strandat 1054.318 kb on + strandat 1054.330 kb on + strandat 1054.331 kb on - strandat 1054.331 kb on - strandat 1054.422 kb on + strand, within SM_b21529at 1054.422 kb on + strand, within SM_b21529at 1054.422 kb on + strand, within SM_b21529at 1054.422 kb on + strand, within SM_b21529at 1054.423 kb on - strand, within SM_b21529

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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1,051,926 + -0.9
1,051,927 - -1.0
1,051,927 - -2.8
1,051,950 + +0.9
1,052,356 - SM_b21527 0.36 -0.5
1,052,464 + SM_b21527 0.49 +0.7
1,052,465 - SM_b21527 0.50 -0.4
1,052,719 - SM_b21527 0.81 +0.4
1,052,719 - SM_b21527 0.81 +0.6
1,052,722 + SM_b21527 0.81 +0.1
1,052,722 + SM_b21527 0.81 +0.8
1,052,722 + SM_b21527 0.81 -1.5
1,052,723 - SM_b21527 0.81 -0.6
1,052,723 - SM_b21527 0.81 +0.3
1,052,723 - SM_b21527 0.81 +0.2
1,052,723 - SM_b21527 0.81 -0.1
1,052,828 - +0.7
1,052,915 + +0.2
1,052,915 + +0.7
1,052,915 + +0.6
1,052,915 + -1.0
1,052,917 - +0.1
1,053,106 + SM_b21528 0.29 +0.2
1,053,106 + SM_b21528 0.29 -2.4
1,053,106 + SM_b21528 0.29 +1.9
1,053,107 - SM_b21528 0.29 +1.2
1,053,107 - SM_b21528 0.29 -0.2
1,053,317 + SM_b21528 0.54 +0.7
1,053,318 - SM_b21528 0.54 +0.3
1,053,318 - SM_b21528 0.54 +0.1
1,053,318 - SM_b21528 0.54 -2.0
1,053,318 - SM_b21528 0.54 +0.4
1,053,465 + SM_b21528 0.72 -1.6
1,053,466 - SM_b21528 0.72 +0.7
1,053,466 - SM_b21528 0.72 -0.5
1,053,466 - SM_b21528 0.72 +0.5
1,053,590 - SM_b21528 0.87 +0.0
1,053,758 + +0.2
1,053,758 + +4.1
1,053,981 - SM_b21670 0.44 +0.5
1,053,981 - SM_b21670 0.44 +0.7
1,054,083 + SM_b21670 0.70 +0.8
1,054,083 + SM_b21670 0.70 -2.4
1,054,084 - SM_b21670 0.71 +1.7
1,054,276 + -0.2
1,054,276 + -0.4
1,054,276 + -1.6
1,054,277 - -0.3
1,054,277 - +0.0
1,054,318 + -1.8
1,054,330 + +0.9
1,054,331 - -2.5
1,054,331 - +0.4
1,054,422 + SM_b21529 0.14 -0.8
1,054,422 + SM_b21529 0.14 -0.3
1,054,422 + SM_b21529 0.14 -0.4
1,054,422 + SM_b21529 0.14 -0.1
1,054,423 - SM_b21529 0.14 -0.8

Or see this region's nucleotide sequence