Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21383

Experiment: Chlorite 0.1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21381 and SM_b21382 are separated by 12 nucleotidesSM_b21382 and SM_b21383 are separated by 236 nucleotidesSM_b21383 and SM_b21384 are separated by 103 nucleotides SM_b21381: SM_b21381 - hypothetical protein, at 1,045,260 to 1,045,598 _b21381 SM_b21382: SM_b21382 - hypothetical protein, at 1,045,611 to 1,046,132 _b21382 SM_b21383: SM_b21383 - SDR family dehydrogenase, at 1,046,369 to 1,047,259 _b21383 SM_b21384: SM_b21384 - SDR family dehydrogenase, at 1,047,363 to 1,048,106 _b21384 Position (kb) 1046 1047 1048Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1045.544 kb on + strand, within SM_b21381at 1045.545 kb on - strand, within SM_b21381at 1045.545 kb on - strand, within SM_b21381at 1045.628 kb on + strandat 1045.629 kb on - strandat 1045.629 kb on - strandat 1045.629 kb on - strandat 1045.629 kb on - strandat 1045.630 kb on + strandat 1045.630 kb on + strandat 1045.630 kb on + strandat 1045.630 kb on + strandat 1045.630 kb on + strandat 1045.630 kb on + strandat 1045.630 kb on + strandat 1045.631 kb on - strandat 1045.631 kb on - strandat 1045.631 kb on - strandat 1045.631 kb on - strandat 1045.631 kb on - strandat 1045.631 kb on - strandat 1045.631 kb on - strandat 1045.647 kb on - strandat 1045.774 kb on + strand, within SM_b21382at 1045.774 kb on + strand, within SM_b21382at 1045.774 kb on + strand, within SM_b21382at 1045.775 kb on - strand, within SM_b21382at 1045.775 kb on - strand, within SM_b21382at 1045.923 kb on - strand, within SM_b21382at 1045.949 kb on - strand, within SM_b21382at 1045.996 kb on + strand, within SM_b21382at 1046.149 kb on + strandat 1046.325 kb on + strandat 1046.326 kb on - strandat 1046.326 kb on - strandat 1046.326 kb on - strandat 1046.326 kb on - strandat 1046.370 kb on + strandat 1046.370 kb on + strandat 1046.370 kb on + strandat 1046.392 kb on - strandat 1046.392 kb on - strandat 1046.393 kb on + strandat 1046.393 kb on + strandat 1046.394 kb on - strandat 1046.620 kb on - strand, within SM_b21383at 1046.650 kb on - strand, within SM_b21383at 1046.659 kb on - strand, within SM_b21383at 1046.681 kb on - strand, within SM_b21383at 1046.703 kb on - strand, within SM_b21383at 1046.936 kb on - strand, within SM_b21383at 1047.005 kb on + strand, within SM_b21383at 1047.032 kb on + strand, within SM_b21383at 1047.033 kb on - strand, within SM_b21383at 1047.033 kb on - strand, within SM_b21383at 1047.056 kb on + strand, within SM_b21383at 1047.056 kb on + strand, within SM_b21383at 1047.057 kb on - strand, within SM_b21383at 1047.057 kb on - strand, within SM_b21383at 1047.227 kb on - strandat 1047.515 kb on + strand, within SM_b21384at 1047.516 kb on - strand, within SM_b21384at 1047.516 kb on - strand, within SM_b21384at 1047.516 kb on - strand, within SM_b21384at 1047.517 kb on + strand, within SM_b21384at 1047.518 kb on - strand, within SM_b21384at 1047.518 kb on - strand, within SM_b21384at 1047.530 kb on + strand, within SM_b21384at 1047.625 kb on + strand, within SM_b21384at 1047.625 kb on + strand, within SM_b21384at 1047.625 kb on + strand, within SM_b21384at 1047.625 kb on + strand, within SM_b21384at 1047.626 kb on - strand, within SM_b21384at 1047.655 kb on + strand, within SM_b21384at 1047.674 kb on + strand, within SM_b21384at 1047.674 kb on + strand, within SM_b21384at 1047.675 kb on - strand, within SM_b21384at 1047.779 kb on + strand, within SM_b21384at 1047.854 kb on + strand, within SM_b21384at 1047.855 kb on - strand, within SM_b21384at 1047.855 kb on - strand, within SM_b21384at 1047.864 kb on + strand, within SM_b21384at 1047.950 kb on - strand, within SM_b21384at 1047.950 kb on - strand, within SM_b21384at 1048.006 kb on - strand, within SM_b21384at 1048.127 kb on - strandat 1048.151 kb on + strandat 1048.151 kb on + strandat 1048.152 kb on - strandat 1048.152 kb on - strandat 1048.152 kb on - strandat 1048.152 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
remove
1,045,544 + SM_b21381 0.84 -1.0
1,045,545 - SM_b21381 0.84 +0.4
1,045,545 - SM_b21381 0.84 +0.3
1,045,628 + +1.1
1,045,629 - -0.0
1,045,629 - +0.4
1,045,629 - +0.3
1,045,629 - -0.8
1,045,630 + -0.8
1,045,630 + -1.6
1,045,630 + -1.1
1,045,630 + +1.9
1,045,630 + +0.2
1,045,630 + +0.2
1,045,630 + -0.8
1,045,631 - -0.7
1,045,631 - -0.6
1,045,631 - -3.2
1,045,631 - +0.2
1,045,631 - -0.7
1,045,631 - +0.2
1,045,631 - +0.7
1,045,647 - +2.0
1,045,774 + SM_b21382 0.31 -0.8
1,045,774 + SM_b21382 0.31 +1.0
1,045,774 + SM_b21382 0.31 +0.2
1,045,775 - SM_b21382 0.31 -1.6
1,045,775 - SM_b21382 0.31 -0.7
1,045,923 - SM_b21382 0.60 +0.1
1,045,949 - SM_b21382 0.65 -0.3
1,045,996 + SM_b21382 0.74 -1.2
1,046,149 + +0.1
1,046,325 + +0.9
1,046,326 - +2.5
1,046,326 - +0.1
1,046,326 - -1.3
1,046,326 - +1.7
1,046,370 + -4.3
1,046,370 + +0.7
1,046,370 + +3.9
1,046,392 - -0.8
1,046,392 - +0.5
1,046,393 + -0.2
1,046,393 + -1.1
1,046,394 - -0.1
1,046,620 - SM_b21383 0.28 -0.8
1,046,650 - SM_b21383 0.32 +1.1
1,046,659 - SM_b21383 0.33 +0.7
1,046,681 - SM_b21383 0.35 +2.1
1,046,703 - SM_b21383 0.37 -1.8
1,046,936 - SM_b21383 0.64 -3.0
1,047,005 + SM_b21383 0.71 +0.5
1,047,032 + SM_b21383 0.74 +1.1
1,047,033 - SM_b21383 0.75 +0.4
1,047,033 - SM_b21383 0.75 +0.1
1,047,056 + SM_b21383 0.77 +0.3
1,047,056 + SM_b21383 0.77 -1.8
1,047,057 - SM_b21383 0.77 -2.4
1,047,057 - SM_b21383 0.77 +0.6
1,047,227 - -0.9
1,047,515 + SM_b21384 0.20 -1.0
1,047,516 - SM_b21384 0.21 +0.7
1,047,516 - SM_b21384 0.21 -0.9
1,047,516 - SM_b21384 0.21 +1.2
1,047,517 + SM_b21384 0.21 +0.5
1,047,518 - SM_b21384 0.21 +1.0
1,047,518 - SM_b21384 0.21 +1.1
1,047,530 + SM_b21384 0.22 -1.0
1,047,625 + SM_b21384 0.35 -0.2
1,047,625 + SM_b21384 0.35 -0.1
1,047,625 + SM_b21384 0.35 -0.4
1,047,625 + SM_b21384 0.35 -4.0
1,047,626 - SM_b21384 0.35 -2.8
1,047,655 + SM_b21384 0.39 +0.3
1,047,674 + SM_b21384 0.42 +0.5
1,047,674 + SM_b21384 0.42 +0.8
1,047,675 - SM_b21384 0.42 +1.7
1,047,779 + SM_b21384 0.56 -3.0
1,047,854 + SM_b21384 0.66 -0.2
1,047,855 - SM_b21384 0.66 +0.7
1,047,855 - SM_b21384 0.66 -0.6
1,047,864 + SM_b21384 0.67 -0.9
1,047,950 - SM_b21384 0.79 +0.1
1,047,950 - SM_b21384 0.79 -1.6
1,048,006 - SM_b21384 0.86 -0.6
1,048,127 - +0.4
1,048,151 + -1.5
1,048,151 + -1.8
1,048,152 - -1.1
1,048,152 - +1.3
1,048,152 - -0.5
1,048,152 - +0.8

Or see this region's nucleotide sequence