Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21363

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21361 and SM_b21362 are separated by 123 nucleotidesSM_b21362 and SM_b21668 are separated by 140 nucleotidesSM_b21668 and SM_b21363 are separated by 57 nucleotidesSM_b21363 and SM_b21364 are separated by 8 nucleotides SM_b21361: SM_b21361 - hypothetical protein, at 1,025,047 to 1,025,547 _b21361 SM_b21362: SM_b21362 - hypothetical protein, at 1,025,671 to 1,026,111 _b21362 SM_b21668: SM_b21668 - hypothetical protein, at 1,026,252 to 1,026,479 _b21668 SM_b21363: SM_b21363 - hypothetical protein, at 1,026,537 to 1,027,631 _b21363 SM_b21364: SM_b21364 - membrane-anchored oxidoreductase, L-sorbosone dehydrogenase, at 1,027,640 to 1,029,193 _b21364 Position (kb) 1026 1027 1028Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1025.595 kb on + strandat 1025.665 kb on + strandat 1025.665 kb on + strandat 1025.665 kb on + strandat 1025.666 kb on - strandat 1025.694 kb on + strandat 1025.695 kb on - strandat 1025.702 kb on - strandat 1025.702 kb on - strandat 1025.706 kb on + strandat 1025.891 kb on - strand, within SM_b21362at 1026.011 kb on + strand, within SM_b21362at 1026.011 kb on + strand, within SM_b21362at 1026.011 kb on + strand, within SM_b21362at 1026.011 kb on + strand, within SM_b21362at 1026.012 kb on - strand, within SM_b21362at 1026.012 kb on - strand, within SM_b21362at 1026.012 kb on - strand, within SM_b21362at 1026.012 kb on - strand, within SM_b21362at 1026.012 kb on - strand, within SM_b21362at 1026.012 kb on - strand, within SM_b21362at 1026.092 kb on + strandat 1026.092 kb on + strandat 1026.092 kb on + strandat 1026.092 kb on + strandat 1026.093 kb on - strandat 1026.093 kb on - strandat 1026.093 kb on - strandat 1026.093 kb on - strandat 1026.102 kb on - strandat 1026.151 kb on + strandat 1026.151 kb on + strandat 1026.152 kb on - strandat 1026.152 kb on - strandat 1026.155 kb on - strandat 1026.260 kb on + strandat 1026.344 kb on + strand, within SM_b21668at 1026.345 kb on - strandat 1026.345 kb on - strand, within SM_b21668at 1026.368 kb on + strand, within SM_b21668at 1026.368 kb on - strand, within SM_b21668at 1026.368 kb on - strand, within SM_b21668at 1026.391 kb on - strand, within SM_b21668at 1026.436 kb on + strand, within SM_b21668at 1026.436 kb on + strand, within SM_b21668at 1026.486 kb on - strandat 1026.502 kb on + strandat 1026.502 kb on + strandat 1026.502 kb on + strandat 1026.502 kb on + strandat 1026.502 kb on + strandat 1026.502 kb on + strandat 1026.502 kb on + strandat 1026.559 kb on + strandat 1026.559 kb on + strandat 1026.560 kb on - strandat 1026.560 kb on - strandat 1026.560 kb on - strandat 1026.560 kb on - strandat 1026.823 kb on - strand, within SM_b21363at 1026.823 kb on - strand, within SM_b21363at 1026.839 kb on - strand, within SM_b21363at 1026.870 kb on + strand, within SM_b21363at 1026.871 kb on - strand, within SM_b21363at 1026.871 kb on - strand, within SM_b21363at 1026.911 kb on + strand, within SM_b21363at 1026.911 kb on + strand, within SM_b21363at 1026.912 kb on - strand, within SM_b21363at 1026.912 kb on - strand, within SM_b21363at 1026.912 kb on - strand, within SM_b21363at 1027.015 kb on + strand, within SM_b21363at 1027.083 kb on - strand, within SM_b21363at 1027.083 kb on - strand, within SM_b21363at 1027.253 kb on - strand, within SM_b21363at 1027.303 kb on - strand, within SM_b21363at 1027.346 kb on + strand, within SM_b21363at 1027.405 kb on - strand, within SM_b21363at 1027.407 kb on + strand, within SM_b21363at 1027.407 kb on + strand, within SM_b21363at 1027.407 kb on + strand, within SM_b21363at 1027.407 kb on + strand, within SM_b21363at 1027.428 kb on + strand, within SM_b21363at 1027.428 kb on + strand, within SM_b21363at 1027.429 kb on - strand, within SM_b21363at 1027.440 kb on + strand, within SM_b21363at 1027.440 kb on + strand, within SM_b21363at 1027.440 kb on + strand, within SM_b21363at 1027.440 kb on + strand, within SM_b21363at 1027.441 kb on - strand, within SM_b21363at 1027.441 kb on - strand, within SM_b21363at 1027.441 kb on - strand, within SM_b21363at 1027.596 kb on + strandat 1027.596 kb on + strandat 1027.596 kb on + strandat 1027.596 kb on + strandat 1027.597 kb on - strandat 1027.597 kb on - strandat 1027.597 kb on - strandat 1027.597 kb on - strandat 1027.597 kb on - strandat 1027.597 kb on - strandat 1027.630 kb on - strandat 1027.641 kb on + strandat 1027.641 kb on + strandat 1027.729 kb on + strandat 1027.730 kb on - strandat 1028.028 kb on + strand, within SM_b21364at 1028.028 kb on + strand, within SM_b21364at 1028.029 kb on - strand, within SM_b21364at 1028.029 kb on - strand, within SM_b21364at 1028.029 kb on - strand, within SM_b21364at 1028.040 kb on + strand, within SM_b21364at 1028.041 kb on - strand, within SM_b21364at 1028.041 kb on - strand, within SM_b21364at 1028.081 kb on + strand, within SM_b21364at 1028.082 kb on - strand, within SM_b21364at 1028.170 kb on - strand, within SM_b21364at 1028.170 kb on - strand, within SM_b21364at 1028.244 kb on + strand, within SM_b21364at 1028.244 kb on + strand, within SM_b21364at 1028.245 kb on - strand, within SM_b21364at 1028.263 kb on - strand, within SM_b21364at 1028.263 kb on - strand, within SM_b21364at 1028.263 kb on - strand, within SM_b21364at 1028.263 kb on - strand, within SM_b21364at 1028.263 kb on - strand, within SM_b21364at 1028.433 kb on - strand, within SM_b21364at 1028.433 kb on - strand, within SM_b21364at 1028.484 kb on - strand, within SM_b21364at 1028.511 kb on + strand, within SM_b21364at 1028.512 kb on - strand, within SM_b21364at 1028.587 kb on + strand, within SM_b21364at 1028.631 kb on + strand, within SM_b21364

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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1,025,595 + +4.3
1,025,665 + +0.1
1,025,665 + -0.4
1,025,665 + -1.1
1,025,666 - -3.7
1,025,694 + +0.5
1,025,695 - +0.8
1,025,702 - +0.2
1,025,702 - +2.7
1,025,706 + +0.4
1,025,891 - SM_b21362 0.50 +0.4
1,026,011 + SM_b21362 0.77 +0.1
1,026,011 + SM_b21362 0.77 -1.6
1,026,011 + SM_b21362 0.77 +0.2
1,026,011 + SM_b21362 0.77 -0.4
1,026,012 - SM_b21362 0.77 -0.5
1,026,012 - SM_b21362 0.77 +4.7
1,026,012 - SM_b21362 0.77 +0.9
1,026,012 - SM_b21362 0.77 +0.4
1,026,012 - SM_b21362 0.77 -0.6
1,026,012 - SM_b21362 0.77 +1.1
1,026,092 + -0.3
1,026,092 + -4.5
1,026,092 + +0.7
1,026,092 + -0.3
1,026,093 - +0.2
1,026,093 - +0.5
1,026,093 - -0.2
1,026,093 - -0.1
1,026,102 - +1.4
1,026,151 + -0.5
1,026,151 + +0.9
1,026,152 - -0.1
1,026,152 - +2.0
1,026,155 - +0.9
1,026,260 + +0.1
1,026,344 + SM_b21668 0.40 -1.6
1,026,345 - -0.8
1,026,345 - SM_b21668 0.41 -1.4
1,026,368 + SM_b21668 0.51 +0.4
1,026,368 - SM_b21668 0.51 -1.1
1,026,368 - SM_b21668 0.51 -2.0
1,026,391 - SM_b21668 0.61 -0.1
1,026,436 + SM_b21668 0.81 -3.2
1,026,436 + SM_b21668 0.81 +0.5
1,026,486 - +2.1
1,026,502 + +2.9
1,026,502 + -0.4
1,026,502 + +0.7
1,026,502 + +0.7
1,026,502 + +1.2
1,026,502 + -0.6
1,026,502 + +0.6
1,026,559 + +0.7
1,026,559 + -3.2
1,026,560 - -0.6
1,026,560 - -0.3
1,026,560 - -0.4
1,026,560 - -2.1
1,026,823 - SM_b21363 0.26 +0.8
1,026,823 - SM_b21363 0.26 -0.1
1,026,839 - SM_b21363 0.28 -1.8
1,026,870 + SM_b21363 0.30 +0.6
1,026,871 - SM_b21363 0.31 -1.4
1,026,871 - SM_b21363 0.31 +0.5
1,026,911 + SM_b21363 0.34 +0.6
1,026,911 + SM_b21363 0.34 +0.3
1,026,912 - SM_b21363 0.34 -1.4
1,026,912 - SM_b21363 0.34 +1.8
1,026,912 - SM_b21363 0.34 -2.7
1,027,015 + SM_b21363 0.44 -0.8
1,027,083 - SM_b21363 0.50 +0.2
1,027,083 - SM_b21363 0.50 +2.2
1,027,253 - SM_b21363 0.65 +0.5
1,027,303 - SM_b21363 0.70 -1.2
1,027,346 + SM_b21363 0.74 -3.4
1,027,405 - SM_b21363 0.79 -0.5
1,027,407 + SM_b21363 0.79 -0.0
1,027,407 + SM_b21363 0.79 -2.8
1,027,407 + SM_b21363 0.79 -0.1
1,027,407 + SM_b21363 0.79 -1.8
1,027,428 + SM_b21363 0.81 +0.2
1,027,428 + SM_b21363 0.81 +2.0
1,027,429 - SM_b21363 0.81 +0.1
1,027,440 + SM_b21363 0.82 +1.2
1,027,440 + SM_b21363 0.82 +0.2
1,027,440 + SM_b21363 0.82 +1.5
1,027,440 + SM_b21363 0.82 -0.7
1,027,441 - SM_b21363 0.83 +1.4
1,027,441 - SM_b21363 0.83 -0.5
1,027,441 - SM_b21363 0.83 +0.4
1,027,596 + +0.6
1,027,596 + +0.4
1,027,596 + -0.8
1,027,596 + -3.8
1,027,597 - -0.5
1,027,597 - +0.7
1,027,597 - +2.0
1,027,597 - +1.0
1,027,597 - +1.3
1,027,597 - +0.6
1,027,630 - +0.6
1,027,641 + -0.3
1,027,641 + +0.7
1,027,729 + -3.6
1,027,730 - +0.7
1,028,028 + SM_b21364 0.25 -1.4
1,028,028 + SM_b21364 0.25 -2.4
1,028,029 - SM_b21364 0.25 -2.3
1,028,029 - SM_b21364 0.25 +0.7
1,028,029 - SM_b21364 0.25 -4.2
1,028,040 + SM_b21364 0.26 +1.0
1,028,041 - SM_b21364 0.26 -0.1
1,028,041 - SM_b21364 0.26 -1.6
1,028,081 + SM_b21364 0.28 +1.7
1,028,082 - SM_b21364 0.28 -0.6
1,028,170 - SM_b21364 0.34 -1.2
1,028,170 - SM_b21364 0.34 -0.4
1,028,244 + SM_b21364 0.39 -0.9
1,028,244 + SM_b21364 0.39 +0.1
1,028,245 - SM_b21364 0.39 -1.2
1,028,263 - SM_b21364 0.40 -1.9
1,028,263 - SM_b21364 0.40 -0.8
1,028,263 - SM_b21364 0.40 -3.0
1,028,263 - SM_b21364 0.40 +0.8
1,028,263 - SM_b21364 0.40 -2.6
1,028,433 - SM_b21364 0.51 +0.0
1,028,433 - SM_b21364 0.51 -0.4
1,028,484 - SM_b21364 0.54 -2.1
1,028,511 + SM_b21364 0.56 +0.0
1,028,512 - SM_b21364 0.56 +0.9
1,028,587 + SM_b21364 0.61 +1.2
1,028,631 + SM_b21364 0.64 -1.1

Or see this region's nucleotide sequence