Experiment: Chlorite 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21018 and SM_b21019 overlap by 8 nucleotides SM_b21019 and SM_b21021 are separated by 225 nucleotides
SM_b21018: SM_b21018 - sugar ABC transporter permease, at 641,408 to 642,439
_b21018
SM_b21019: SM_b21019 - sugar ABC transporter ATP-binding protein, at 642,432 to 643,949
_b21019
SM_b21021: SM_b21021 - transcriptional regulator, at 644,175 to 645,122
_b21021
Position (kb) 642
643
644 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 641.580 kb on + strand, within SM_b21018 at 641.626 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.691 kb on - strand, within SM_b21018 at 641.691 kb on - strand, within SM_b21018 at 641.831 kb on - strand, within SM_b21018 at 641.837 kb on + strand, within SM_b21018 at 641.880 kb on + strand, within SM_b21018 at 642.106 kb on - strand, within SM_b21018 at 642.106 kb on - strand, within SM_b21018 at 642.254 kb on - strand, within SM_b21018 at 642.277 kb on + strand, within SM_b21018 at 642.277 kb on + strand, within SM_b21018 at 642.278 kb on - strand, within SM_b21018 at 642.348 kb on + strand at 642.349 kb on - strand at 642.349 kb on - strand at 642.396 kb on - strand at 642.396 kb on - strand at 642.628 kb on + strand, within SM_b21019 at 642.815 kb on + strand, within SM_b21019 at 642.816 kb on - strand, within SM_b21019 at 642.816 kb on - strand, within SM_b21019 at 642.931 kb on + strand, within SM_b21019 at 642.954 kb on + strand, within SM_b21019 at 642.955 kb on - strand, within SM_b21019 at 643.112 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.256 kb on - strand, within SM_b21019 at 643.299 kb on + strand, within SM_b21019 at 643.446 kb on + strand, within SM_b21019 at 643.446 kb on + strand, within SM_b21019 at 643.447 kb on - strand, within SM_b21019 at 643.468 kb on - strand, within SM_b21019 at 643.468 kb on - strand, within SM_b21019 at 643.672 kb on + strand, within SM_b21019 at 643.748 kb on + strand, within SM_b21019 at 643.877 kb on - strand at 644.024 kb on - strand at 644.055 kb on + strand at 644.244 kb on + strand at 644.245 kb on - strand at 644.245 kb on - strand at 644.247 kb on + strand at 644.247 kb on + strand at 644.248 kb on - strand at 644.248 kb on - strand at 644.248 kb on - strand at 644.250 kb on + strand at 644.250 kb on + strand at 644.348 kb on + strand, within SM_b21021 at 644.360 kb on + strand, within SM_b21021 at 644.360 kb on + strand at 644.373 kb on + strand, within SM_b21021 at 644.374 kb on - strand, within SM_b21021 at 644.416 kb on - strand, within SM_b21021 at 644.433 kb on + strand, within SM_b21021 at 644.433 kb on + strand, within SM_b21021 at 644.601 kb on - strand, within SM_b21021 at 644.601 kb on - strand, within SM_b21021 at 644.609 kb on - strand, within SM_b21021 at 644.637 kb on + strand, within SM_b21021 at 644.637 kb on + strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.784 kb on + strand, within SM_b21021 at 644.785 kb on - strand, within SM_b21021 at 644.842 kb on - strand, within SM_b21021
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.1 mM remove 641,580 + SM_b21018 0.17 +1.5 641,626 + SM_b21018 0.21 -0.5 641,690 + SM_b21018 0.27 -2.5 641,690 + SM_b21018 0.27 +0.7 641,690 + SM_b21018 0.27 -0.1 641,691 - SM_b21018 0.27 +0.3 641,691 - SM_b21018 0.27 +1.2 641,831 - SM_b21018 0.41 -1.0 641,837 + SM_b21018 0.42 -0.9 641,880 + SM_b21018 0.46 +1.7 642,106 - SM_b21018 0.68 -1.1 642,106 - SM_b21018 0.68 +0.2 642,254 - SM_b21018 0.82 +2.1 642,277 + SM_b21018 0.84 +1.0 642,277 + SM_b21018 0.84 -1.0 642,278 - SM_b21018 0.84 -0.0 642,348 + -0.3 642,349 - -2.8 642,349 - +0.2 642,396 - -0.8 642,396 - -0.4 642,628 + SM_b21019 0.13 -2.3 642,815 + SM_b21019 0.25 +0.3 642,816 - SM_b21019 0.25 +0.1 642,816 - SM_b21019 0.25 -0.1 642,931 + SM_b21019 0.33 -1.5 642,954 + SM_b21019 0.34 -0.5 642,955 - SM_b21019 0.34 -2.5 643,112 + SM_b21019 0.45 +0.7 643,255 + SM_b21019 0.54 +0.1 643,255 + SM_b21019 0.54 +0.5 643,255 + SM_b21019 0.54 +0.7 643,256 - SM_b21019 0.54 +0.2 643,299 + SM_b21019 0.57 -0.2 643,446 + SM_b21019 0.67 -0.1 643,446 + SM_b21019 0.67 -0.3 643,447 - SM_b21019 0.67 -1.5 643,468 - SM_b21019 0.68 -0.3 643,468 - SM_b21019 0.68 +2.2 643,672 + SM_b21019 0.82 -0.1 643,748 + SM_b21019 0.87 -0.8 643,877 - -0.8 644,024 - -0.9 644,055 + -0.3 644,244 + -0.9 644,245 - +1.7 644,245 - -0.3 644,247 + -1.6 644,247 + +0.7 644,248 - -0.3 644,248 - -0.4 644,248 - -0.1 644,250 + -1.5 644,250 + +0.1 644,348 + SM_b21021 0.18 +0.4 644,360 + SM_b21021 0.20 +2.6 644,360 + +3.5 644,373 + SM_b21021 0.21 +1.4 644,374 - SM_b21021 0.21 -1.3 644,416 - SM_b21021 0.25 +0.7 644,433 + SM_b21021 0.27 -0.5 644,433 + SM_b21021 0.27 +1.3 644,601 - SM_b21021 0.45 -0.1 644,601 - SM_b21021 0.45 -0.2 644,609 - SM_b21021 0.46 +0.0 644,637 + SM_b21021 0.49 -1.9 644,637 + SM_b21021 0.49 -1.3 644,638 - SM_b21021 0.49 +0.3 644,638 - SM_b21021 0.49 +0.7 644,638 - SM_b21021 0.49 +0.0 644,638 - SM_b21021 0.49 +2.5 644,784 + SM_b21021 0.64 +0.3 644,785 - SM_b21021 0.64 -1.3 644,842 - SM_b21021 0.70 -0.4
Or see this region's nucleotide sequence