Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20745

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20728 and SM_b20729 are separated by 108 nucleotidesSM_b20729 and SM_b20745 are separated by 459 nucleotidesSM_b20745 and SM_b20746 are separated by 563 nucleotidesSM_b20746 and SM_b20747 are separated by 19 nucleotides SM_b20728: SM_b20728 - hypothetical protein, at 1,532,685 to 1,532,894 _b20728 SM_b20729: SM_b20729 - hypothetical protein, at 1,533,003 to 1,533,416 _b20729 SM_b20745: SM_b20745 - glutatmine synthetase II protein, at 1,533,876 to 1,534,910 _b20745 SM_b20746: SM_b20746 - hypothetical protein, at 1,535,474 to 1,535,659 _b20746 SM_b20747: SM_b20747 - hypothetical protein, at 1,535,679 to 1,536,353 _b20747 Position (kb) 1533 1534 1535Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1533.042 kb on + strandat 1533.394 kb on + strandat 1533.395 kb on - strandat 1533.395 kb on - strandat 1533.395 kb on - strandat 1533.395 kb on - strandat 1533.528 kb on + strandat 1533.528 kb on + strandat 1533.529 kb on - strandat 1533.536 kb on + strandat 1533.536 kb on + strandat 1533.536 kb on + strandat 1533.536 kb on + strandat 1533.537 kb on - strandat 1533.537 kb on - strandat 1533.537 kb on - strandat 1533.537 kb on - strandat 1533.538 kb on + strandat 1533.539 kb on - strandat 1533.539 kb on - strandat 1533.539 kb on - strandat 1533.549 kb on + strandat 1533.549 kb on + strandat 1533.549 kb on + strandat 1533.550 kb on - strandat 1533.579 kb on + strandat 1533.643 kb on + strandat 1533.643 kb on + strandat 1533.644 kb on - strandat 1533.672 kb on + strandat 1533.673 kb on - strandat 1533.675 kb on - strandat 1533.675 kb on - strandat 1533.757 kb on + strandat 1533.758 kb on - strandat 1533.848 kb on + strandat 1533.848 kb on + strandat 1533.983 kb on - strand, within SM_b20745at 1533.991 kb on + strand, within SM_b20745at 1534.117 kb on + strand, within SM_b20745at 1534.117 kb on + strand, within SM_b20745at 1534.117 kb on + strand, within SM_b20745at 1534.174 kb on + strand, within SM_b20745at 1534.201 kb on + strand, within SM_b20745at 1534.202 kb on - strand, within SM_b20745at 1534.202 kb on - strand, within SM_b20745at 1534.202 kb on - strand, within SM_b20745at 1534.202 kb on - strand, within SM_b20745at 1534.315 kb on + strand, within SM_b20745at 1534.315 kb on + strand, within SM_b20745at 1534.504 kb on + strand, within SM_b20745at 1534.504 kb on + strand, within SM_b20745at 1534.504 kb on + strand, within SM_b20745at 1534.577 kb on - strand, within SM_b20745at 1534.577 kb on - strand, within SM_b20745at 1534.888 kb on + strandat 1534.888 kb on + strandat 1534.900 kb on + strandat 1534.900 kb on + strandat 1534.900 kb on + strandat 1534.900 kb on + strandat 1534.900 kb on + strandat 1534.901 kb on - strandat 1534.925 kb on - strandat 1535.054 kb on + strandat 1535.054 kb on + strandat 1535.346 kb on + strandat 1535.347 kb on - strandat 1535.347 kb on - strandat 1535.347 kb on - strandat 1535.440 kb on + strandat 1535.441 kb on - strandat 1535.441 kb on - strandat 1535.441 kb on - strandat 1535.622 kb on - strand, within SM_b20746at 1535.670 kb on + strandat 1535.840 kb on + strand, within SM_b20747at 1535.840 kb on + strand, within SM_b20747at 1535.841 kb on - strand, within SM_b20747

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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1,533,042 + -0.6
1,533,394 + -0.5
1,533,395 - -1.0
1,533,395 - +1.8
1,533,395 - +0.5
1,533,395 - +1.0
1,533,528 + +0.8
1,533,528 + -2.5
1,533,529 - -1.9
1,533,536 + +0.8
1,533,536 + -1.3
1,533,536 + -0.8
1,533,536 + -0.4
1,533,537 - +3.1
1,533,537 - -0.0
1,533,537 - +0.2
1,533,537 - -2.5
1,533,538 + -0.1
1,533,539 - +2.0
1,533,539 - -2.2
1,533,539 - +0.0
1,533,549 + +0.3
1,533,549 + +0.4
1,533,549 + +0.2
1,533,550 - -1.0
1,533,579 + +2.1
1,533,643 + -2.3
1,533,643 + -1.9
1,533,644 - +4.0
1,533,672 + -0.0
1,533,673 - -0.2
1,533,675 - -0.5
1,533,675 - -2.9
1,533,757 + +0.2
1,533,758 - -0.6
1,533,848 + +0.8
1,533,848 + -0.5
1,533,983 - SM_b20745 0.10 +0.8
1,533,991 + SM_b20745 0.11 +1.8
1,534,117 + SM_b20745 0.23 +0.7
1,534,117 + SM_b20745 0.23 +0.3
1,534,117 + SM_b20745 0.23 -0.8
1,534,174 + SM_b20745 0.29 -0.6
1,534,201 + SM_b20745 0.31 -2.0
1,534,202 - SM_b20745 0.31 +0.1
1,534,202 - SM_b20745 0.31 -0.3
1,534,202 - SM_b20745 0.31 +0.7
1,534,202 - SM_b20745 0.31 +0.8
1,534,315 + SM_b20745 0.42 +0.3
1,534,315 + SM_b20745 0.42 +0.1
1,534,504 + SM_b20745 0.61 -0.0
1,534,504 + SM_b20745 0.61 -0.6
1,534,504 + SM_b20745 0.61 -3.9
1,534,577 - SM_b20745 0.68 +0.8
1,534,577 - SM_b20745 0.68 +1.2
1,534,888 + +1.7
1,534,888 + +0.4
1,534,900 + +1.0
1,534,900 + -0.1
1,534,900 + -0.5
1,534,900 + +0.8
1,534,900 + -0.4
1,534,901 - -2.3
1,534,925 - +0.4
1,535,054 + +0.2
1,535,054 + +0.4
1,535,346 + +1.8
1,535,347 - -3.1
1,535,347 - +0.3
1,535,347 - -0.1
1,535,440 + +0.6
1,535,441 - +1.0
1,535,441 - +0.5
1,535,441 - +1.0
1,535,622 - SM_b20746 0.80 -0.9
1,535,670 + -0.2
1,535,840 + SM_b20747 0.24 +0.4
1,535,840 + SM_b20747 0.24 +2.3
1,535,841 - SM_b20747 0.24 -0.3

Or see this region's nucleotide sequence