Experiment: Chlorite 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20295 and SM_b20296 are separated by 55 nucleotides SM_b20296 and SM_b20297 are separated by 0 nucleotides SM_b20297 and SM_b20298 overlap by 4 nucleotides SM_b20298 and SM_b20299 are separated by 13 nucleotides
SM_b20295: SM_b20295 - ABC transporter substrate-binding protein, at 301,924 to 302,895
_b20295
SM_b20296: SM_b20296 - permease, at 302,951 to 303,469
_b20296
SM_b20297: SM_b20297 - permease, at 303,470 to 304,750
_b20297
SM_b20298: SM_b20298 - hypothetical protein, at 304,747 to 305,682
_b20298
SM_b20299: SM_b20299 - N-acetylneuraminate lyase, at 305,696 to 306,595
_b20299
Position (kb) 303
304
305 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 302.506 kb on + strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.507 kb on - strand, within SM_b20295 at 302.507 kb on - strand, within SM_b20295 at 302.833 kb on + strand at 303.176 kb on - strand, within SM_b20296 at 303.267 kb on - strand, within SM_b20296 at 303.267 kb on - strand, within SM_b20296 at 303.269 kb on + strand, within SM_b20296 at 303.270 kb on - strand, within SM_b20296 at 303.270 kb on - strand, within SM_b20296 at 303.461 kb on + strand at 303.462 kb on - strand at 303.462 kb on - strand at 303.467 kb on + strand at 303.468 kb on - strand at 303.554 kb on + strand at 303.555 kb on - strand at 303.725 kb on - strand, within SM_b20297 at 303.725 kb on - strand, within SM_b20297 at 303.897 kb on + strand, within SM_b20297 at 303.898 kb on - strand, within SM_b20297 at 303.935 kb on + strand, within SM_b20297 at 303.952 kb on + strand, within SM_b20297 at 303.953 kb on - strand, within SM_b20297 at 304.028 kb on + strand, within SM_b20297 at 304.029 kb on - strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.053 kb on - strand, within SM_b20297 at 304.053 kb on - strand, within SM_b20297 at 304.053 kb on - strand, within SM_b20297 at 304.283 kb on - strand, within SM_b20297 at 304.350 kb on + strand, within SM_b20297 at 304.351 kb on - strand, within SM_b20297 at 304.382 kb on + strand, within SM_b20297 at 304.382 kb on + strand, within SM_b20297 at 304.382 kb on + strand, within SM_b20297 at 304.383 kb on - strand, within SM_b20297 at 304.646 kb on - strand at 305.102 kb on - strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.170 kb on - strand, within SM_b20298 at 305.219 kb on + strand, within SM_b20298 at 305.220 kb on - strand, within SM_b20298 at 305.371 kb on + strand, within SM_b20298 at 305.372 kb on - strand, within SM_b20298 at 305.596 kb on + strand at 305.596 kb on + strand at 305.596 kb on + strand at 305.597 kb on - strand at 305.598 kb on + strand at 305.598 kb on + strand at 305.598 kb on + strand at 305.599 kb on - strand at 305.599 kb on - strand at 305.693 kb on - strand at 305.693 kb on - strand at 305.714 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.1 mM remove 302,506 + SM_b20295 0.60 +0.4 302,506 + SM_b20295 0.60 +0.3 302,506 + SM_b20295 0.60 -0.7 302,507 - SM_b20295 0.60 +0.6 302,507 - SM_b20295 0.60 +2.2 302,833 + +4.0 303,176 - SM_b20296 0.43 -3.1 303,267 - SM_b20296 0.61 -0.5 303,267 - SM_b20296 0.61 +3.0 303,269 + SM_b20296 0.61 -0.1 303,270 - SM_b20296 0.61 -0.2 303,270 - SM_b20296 0.61 +0.5 303,461 + +1.7 303,462 - -0.1 303,462 - +1.2 303,467 + +0.5 303,468 - -0.7 303,554 + -3.6 303,555 - +0.9 303,725 - SM_b20297 0.20 +0.3 303,725 - SM_b20297 0.20 -1.9 303,897 + SM_b20297 0.33 -0.2 303,898 - SM_b20297 0.33 -2.6 303,935 + SM_b20297 0.36 -0.7 303,952 + SM_b20297 0.38 -1.9 303,953 - SM_b20297 0.38 +0.3 304,028 + SM_b20297 0.44 -0.0 304,029 - SM_b20297 0.44 +0.3 304,052 + SM_b20297 0.45 -2.0 304,052 + SM_b20297 0.45 +0.4 304,052 + SM_b20297 0.45 -1.7 304,052 + SM_b20297 0.45 -0.3 304,052 + SM_b20297 0.45 +0.5 304,053 - SM_b20297 0.46 +1.5 304,053 - SM_b20297 0.46 +0.2 304,053 - SM_b20297 0.46 -0.9 304,283 - SM_b20297 0.63 -1.9 304,350 + SM_b20297 0.69 -0.3 304,351 - SM_b20297 0.69 -0.5 304,382 + SM_b20297 0.71 +1.6 304,382 + SM_b20297 0.71 -0.4 304,382 + SM_b20297 0.71 -0.4 304,383 - SM_b20297 0.71 +0.9 304,646 - -2.1 305,102 - SM_b20298 0.38 -0.3 305,167 + SM_b20298 0.45 +0.1 305,167 + SM_b20298 0.45 +0.4 305,167 + SM_b20298 0.45 -0.1 305,167 + SM_b20298 0.45 -1.4 305,170 - SM_b20298 0.45 -2.2 305,219 + SM_b20298 0.50 +0.4 305,220 - SM_b20298 0.51 -3.4 305,371 + SM_b20298 0.67 +1.2 305,372 - SM_b20298 0.67 +3.2 305,596 + -0.2 305,596 + -0.4 305,596 + -0.5 305,597 - -0.3 305,598 + +1.1 305,598 + +0.9 305,598 + -0.5 305,599 - -1.5 305,599 - -1.2 305,693 - -1.4 305,693 - +0.3 305,714 + -0.1
Or see this region's nucleotide sequence