Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20234

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20232 and SM_b20233 overlap by 11 nucleotidesSM_b20233 and SM_b20234 are separated by 30 nucleotidesSM_b20234 and SM_b20235 are separated by 1 nucleotides SM_b20232: SM_b20232 - sugar ABC transporter permease, at 237,509 to 238,453 _b20232 SM_b20233: SM_b20233 - sugar ABC transporter permease, at 238,443 to 239,291 _b20233 SM_b20234: SM_b20234 - hypothetical protein, at 239,322 to 240,518 _b20234 SM_b20235: SM_b20235 - sugar ABC transporter ATP-binding protein, at 240,520 to 241,611 _b20235 Position (kb) 239 240 241Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 238.452 kb on - strandat 238.611 kb on - strand, within SM_b20233at 238.644 kb on + strand, within SM_b20233at 238.644 kb on + strand, within SM_b20233at 238.644 kb on + strand, within SM_b20233at 238.644 kb on + strand, within SM_b20233at 238.645 kb on - strand, within SM_b20233at 238.645 kb on - strand, within SM_b20233at 238.648 kb on + strand, within SM_b20233at 238.649 kb on - strand, within SM_b20233at 238.649 kb on - strand, within SM_b20233at 238.649 kb on - strand, within SM_b20233at 238.674 kb on + strand, within SM_b20233at 238.674 kb on + strand, within SM_b20233at 238.674 kb on + strand, within SM_b20233at 238.675 kb on - strand, within SM_b20233at 238.692 kb on + strand, within SM_b20233at 238.942 kb on - strand, within SM_b20233at 238.944 kb on + strand, within SM_b20233at 238.945 kb on - strand, within SM_b20233at 238.945 kb on - strand, within SM_b20233at 238.945 kb on - strand, within SM_b20233at 238.945 kb on - strand, within SM_b20233at 238.945 kb on - strand, within SM_b20233at 239.187 kb on + strand, within SM_b20233at 239.188 kb on - strand, within SM_b20233at 239.188 kb on - strand, within SM_b20233at 239.305 kb on - strandat 239.466 kb on + strand, within SM_b20234at 239.467 kb on - strand, within SM_b20234at 239.467 kb on - strand, within SM_b20234at 239.492 kb on + strand, within SM_b20234at 239.492 kb on + strand, within SM_b20234at 239.493 kb on - strand, within SM_b20234at 239.636 kb on + strand, within SM_b20234at 239.636 kb on + strand, within SM_b20234at 239.688 kb on + strand, within SM_b20234at 239.688 kb on + strand, within SM_b20234at 239.760 kb on + strand, within SM_b20234at 239.760 kb on + strand, within SM_b20234at 239.760 kb on + strand, within SM_b20234at 239.761 kb on - strand, within SM_b20234at 239.761 kb on - strand, within SM_b20234at 239.761 kb on - strand, within SM_b20234at 239.761 kb on - strand, within SM_b20234at 239.761 kb on - strand, within SM_b20234at 239.763 kb on + strand, within SM_b20234at 239.763 kb on + strand, within SM_b20234at 239.763 kb on + strand, within SM_b20234at 239.764 kb on - strand, within SM_b20234at 239.764 kb on - strand, within SM_b20234at 239.764 kb on - strand, within SM_b20234at 239.766 kb on + strand, within SM_b20234at 239.766 kb on + strand, within SM_b20234at 239.766 kb on + strand, within SM_b20234at 239.767 kb on - strand, within SM_b20234at 239.768 kb on + strand, within SM_b20234at 239.769 kb on - strand, within SM_b20234at 239.769 kb on - strand, within SM_b20234at 239.919 kb on + strand, within SM_b20234at 239.952 kb on + strand, within SM_b20234at 239.953 kb on - strand, within SM_b20234at 239.953 kb on - strand, within SM_b20234at 239.962 kb on + strand, within SM_b20234at 239.962 kb on + strand, within SM_b20234at 239.963 kb on - strand, within SM_b20234at 239.963 kb on - strand, within SM_b20234at 240.068 kb on + strand, within SM_b20234at 240.192 kb on + strand, within SM_b20234at 240.193 kb on - strand, within SM_b20234at 240.225 kb on + strand, within SM_b20234at 240.225 kb on + strand, within SM_b20234at 240.225 kb on + strand, within SM_b20234at 240.226 kb on - strand, within SM_b20234at 240.226 kb on - strand, within SM_b20234at 240.227 kb on + strand, within SM_b20234at 240.228 kb on - strand, within SM_b20234at 240.228 kb on - strand, within SM_b20234at 240.228 kb on - strand, within SM_b20234at 240.238 kb on - strand, within SM_b20234at 240.292 kb on - strand, within SM_b20234at 240.380 kb on + strand, within SM_b20234at 240.381 kb on - strand, within SM_b20234at 240.537 kb on - strandat 240.714 kb on + strand, within SM_b20235at 240.714 kb on + strand, within SM_b20235at 240.715 kb on - strand, within SM_b20235at 240.715 kb on - strand, within SM_b20235at 240.749 kb on + strand, within SM_b20235at 240.769 kb on + strand, within SM_b20235at 240.769 kb on + strand, within SM_b20235at 240.769 kb on + strand, within SM_b20235at 240.770 kb on - strand, within SM_b20235at 240.770 kb on - strand, within SM_b20235at 240.778 kb on + strand, within SM_b20235at 241.081 kb on - strand, within SM_b20235at 241.081 kb on - strand, within SM_b20235at 241.081 kb on - strand, within SM_b20235at 241.084 kb on + strand, within SM_b20235at 241.084 kb on + strand, within SM_b20235at 241.085 kb on - strand, within SM_b20235at 241.085 kb on - strand, within SM_b20235at 241.085 kb on - strandat 241.424 kb on + strand, within SM_b20235at 241.425 kb on - strand, within SM_b20235

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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238,452 - +1.3
238,611 - SM_b20233 0.20 -0.6
238,644 + SM_b20233 0.24 +0.9
238,644 + SM_b20233 0.24 +0.4
238,644 + SM_b20233 0.24 -0.7
238,644 + SM_b20233 0.24 +1.0
238,645 - SM_b20233 0.24 +0.1
238,645 - SM_b20233 0.24 -0.2
238,648 + SM_b20233 0.24 -1.0
238,649 - SM_b20233 0.24 -1.2
238,649 - SM_b20233 0.24 -0.9
238,649 - SM_b20233 0.24 +0.2
238,674 + SM_b20233 0.27 -0.1
238,674 + SM_b20233 0.27 +0.3
238,674 + SM_b20233 0.27 -0.7
238,675 - SM_b20233 0.27 -0.6
238,692 + SM_b20233 0.29 -1.4
238,942 - SM_b20233 0.59 -3.9
238,944 + SM_b20233 0.59 +1.5
238,945 - SM_b20233 0.59 +3.5
238,945 - SM_b20233 0.59 -3.2
238,945 - SM_b20233 0.59 +0.7
238,945 - SM_b20233 0.59 -1.1
238,945 - SM_b20233 0.59 -0.2
239,187 + SM_b20233 0.88 -1.9
239,188 - SM_b20233 0.88 -0.2
239,188 - SM_b20233 0.88 +1.5
239,305 - -2.6
239,466 + SM_b20234 0.12 +0.4
239,467 - SM_b20234 0.12 -4.2
239,467 - SM_b20234 0.12 -0.9
239,492 + SM_b20234 0.14 +0.8
239,492 + SM_b20234 0.14 +1.1
239,493 - SM_b20234 0.14 -0.9
239,636 + SM_b20234 0.26 -0.1
239,636 + SM_b20234 0.26 +0.5
239,688 + SM_b20234 0.31 -0.1
239,688 + SM_b20234 0.31 +1.4
239,760 + SM_b20234 0.37 +0.9
239,760 + SM_b20234 0.37 -0.6
239,760 + SM_b20234 0.37 +0.0
239,761 - SM_b20234 0.37 -3.5
239,761 - SM_b20234 0.37 -0.1
239,761 - SM_b20234 0.37 -2.5
239,761 - SM_b20234 0.37 -0.1
239,761 - SM_b20234 0.37 -1.1
239,763 + SM_b20234 0.37 +0.2
239,763 + SM_b20234 0.37 -2.5
239,763 + SM_b20234 0.37 -0.5
239,764 - SM_b20234 0.37 +0.6
239,764 - SM_b20234 0.37 +0.2
239,764 - SM_b20234 0.37 -0.7
239,766 + SM_b20234 0.37 -1.1
239,766 + SM_b20234 0.37 +0.2
239,766 + SM_b20234 0.37 +0.2
239,767 - SM_b20234 0.37 +0.2
239,768 + SM_b20234 0.37 -0.6
239,769 - SM_b20234 0.37 +1.3
239,769 - SM_b20234 0.37 -0.7
239,919 + SM_b20234 0.50 +0.3
239,952 + SM_b20234 0.53 -0.6
239,953 - SM_b20234 0.53 +1.0
239,953 - SM_b20234 0.53 +0.4
239,962 + SM_b20234 0.53 +0.9
239,962 + SM_b20234 0.53 -0.7
239,963 - SM_b20234 0.54 -3.5
239,963 - SM_b20234 0.54 -3.1
240,068 + SM_b20234 0.62 -0.3
240,192 + SM_b20234 0.73 +1.2
240,193 - SM_b20234 0.73 -0.7
240,225 + SM_b20234 0.75 -0.7
240,225 + SM_b20234 0.75 +1.0
240,225 + SM_b20234 0.75 +0.1
240,226 - SM_b20234 0.76 -0.7
240,226 - SM_b20234 0.76 -1.7
240,227 + SM_b20234 0.76 -0.1
240,228 - SM_b20234 0.76 -0.6
240,228 - SM_b20234 0.76 -2.6
240,228 - SM_b20234 0.76 +0.3
240,238 - SM_b20234 0.77 -1.9
240,292 - SM_b20234 0.81 -1.8
240,380 + SM_b20234 0.88 +0.9
240,381 - SM_b20234 0.88 -0.7
240,537 - -0.5
240,714 + SM_b20235 0.18 +2.4
240,714 + SM_b20235 0.18 +0.9
240,715 - SM_b20235 0.18 +0.9
240,715 - SM_b20235 0.18 -1.3
240,749 + SM_b20235 0.21 -0.9
240,769 + SM_b20235 0.23 -0.1
240,769 + SM_b20235 0.23 -2.5
240,769 + SM_b20235 0.23 +0.3
240,770 - SM_b20235 0.23 -0.7
240,770 - SM_b20235 0.23 +1.4
240,778 + SM_b20235 0.24 -1.4
241,081 - SM_b20235 0.51 -1.4
241,081 - SM_b20235 0.51 -0.2
241,081 - SM_b20235 0.51 -1.1
241,084 + SM_b20235 0.52 -0.7
241,084 + SM_b20235 0.52 -0.5
241,085 - SM_b20235 0.52 +1.1
241,085 - SM_b20235 0.52 +3.0
241,085 - -0.7
241,424 + SM_b20235 0.83 +0.7
241,425 - SM_b20235 0.83 -0.6

Or see this region's nucleotide sequence