Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_77

Experiment: Aluminum chloride 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_76 and Pf1N1B4_77 are separated by 307 nucleotidesPf1N1B4_77 and Pf1N1B4_78 are separated by 143 nucleotidesPf1N1B4_78 and Pf1N1B4_79 are separated by 179 nucleotides Pf1N1B4_76 - ATP binding protein, at 79,325 to 80,692 _76 Pf1N1B4_77 - FIG00956064: hypothetical protein, at 81,000 to 81,317 _77 Pf1N1B4_78 - FIG00956937: hypothetical protein, at 81,461 to 81,994 _78 Pf1N1B4_79 - Lactoylglutathione lyase and related lyases, at 82,174 to 82,542 _79 Position (kb) 80 81 82Strain fitness (log2 ratio) -2 -1 0 1 2at 80.281 kb on - strand, within Pf1N1B4_76at 80.281 kb on - strand, within Pf1N1B4_76at 80.344 kb on - strand, within Pf1N1B4_76at 80.374 kb on - strand, within Pf1N1B4_76at 80.449 kb on - strand, within Pf1N1B4_76at 80.503 kb on - strand, within Pf1N1B4_76at 80.659 kb on - strandat 80.705 kb on + strandat 80.752 kb on + strandat 80.752 kb on + strandat 80.752 kb on + strandat 80.752 kb on + strandat 80.753 kb on - strandat 80.753 kb on - strandat 80.753 kb on - strandat 80.753 kb on - strandat 80.824 kb on + strandat 80.824 kb on + strandat 80.824 kb on + strandat 80.825 kb on - strandat 80.825 kb on - strandat 80.877 kb on - strandat 80.877 kb on - strandat 80.911 kb on + strandat 80.927 kb on - strandat 81.030 kb on + strandat 81.030 kb on + strandat 81.031 kb on - strandat 81.071 kb on + strand, within Pf1N1B4_77at 81.071 kb on + strand, within Pf1N1B4_77at 81.071 kb on + strand, within Pf1N1B4_77at 81.137 kb on + strand, within Pf1N1B4_77at 81.162 kb on + strand, within Pf1N1B4_77at 81.220 kb on + strand, within Pf1N1B4_77at 81.289 kb on + strandat 81.290 kb on - strandat 81.290 kb on - strandat 81.315 kb on + strandat 81.316 kb on - strandat 81.334 kb on + strandat 81.335 kb on - strandat 81.335 kb on - strandat 81.403 kb on - strandat 81.403 kb on - strandat 81.426 kb on + strandat 81.778 kb on - strand, within Pf1N1B4_78at 81.778 kb on - strand, within Pf1N1B4_78at 81.778 kb on - strand, within Pf1N1B4_78at 81.778 kb on - strand, within Pf1N1B4_78at 81.967 kb on + strandat 81.968 kb on - strandat 82.022 kb on + strandat 82.064 kb on + strandat 82.064 kb on + strandat 82.064 kb on + strandat 82.065 kb on - strandat 82.065 kb on - strandat 82.065 kb on - strandat 82.065 kb on - strandat 82.065 kb on - strandat 82.070 kb on + strandat 82.071 kb on - strandat 82.071 kb on - strandat 82.071 kb on - strandat 82.090 kb on + strandat 82.090 kb on + strandat 82.091 kb on - strandat 82.091 kb on - strandat 82.091 kb on - strandat 82.124 kb on + strandat 82.125 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 2.5 mM
remove
80,281 - Pf1N1B4_76 0.70 -0.3
80,281 - Pf1N1B4_76 0.70 -1.4
80,344 - Pf1N1B4_76 0.74 +0.3
80,374 - Pf1N1B4_76 0.77 -1.3
80,449 - Pf1N1B4_76 0.82 +0.7
80,503 - Pf1N1B4_76 0.86 -0.9
80,659 - +1.0
80,705 + +0.4
80,752 + -1.8
80,752 + +0.7
80,752 + +2.3
80,752 + -1.7
80,753 - +0.3
80,753 - +0.3
80,753 - +0.5
80,753 - -0.3
80,824 + -1.3
80,824 + -0.3
80,824 + +0.9
80,825 - -0.3
80,825 - +0.3
80,877 - -0.8
80,877 - -0.7
80,911 + +1.7
80,927 - +0.5
81,030 + +0.4
81,030 + +1.6
81,031 - -1.3
81,071 + Pf1N1B4_77 0.22 +0.7
81,071 + Pf1N1B4_77 0.22 +0.1
81,071 + Pf1N1B4_77 0.22 +0.5
81,137 + Pf1N1B4_77 0.43 -0.7
81,162 + Pf1N1B4_77 0.51 +0.7
81,220 + Pf1N1B4_77 0.69 +0.8
81,289 + -1.0
81,290 - -1.8
81,290 - +2.3
81,315 + -0.3
81,316 - -1.3
81,334 + -1.1
81,335 - +1.4
81,335 - -0.0
81,403 - -1.8
81,403 - +0.2
81,426 + -0.3
81,778 - Pf1N1B4_78 0.59 -1.3
81,778 - Pf1N1B4_78 0.59 -1.8
81,778 - Pf1N1B4_78 0.59 +0.6
81,778 - Pf1N1B4_78 0.59 -0.7
81,967 + -0.8
81,968 - +1.1
82,022 + +1.6
82,064 + +0.7
82,064 + +0.2
82,064 + -0.4
82,065 - +0.7
82,065 - -1.3
82,065 - -0.3
82,065 - +2.1
82,065 - -2.6
82,070 + +1.3
82,071 - +1.3
82,071 - +1.3
82,071 - +0.7
82,090 + -0.3
82,090 + +1.3
82,091 - -0.5
82,091 - +0.1
82,091 - +0.1
82,124 + +1.3
82,125 - -1.8

Or see this region's nucleotide sequence