Experiment: Aluminum chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_723 and Pf1N1B4_724 overlap by 11 nucleotides Pf1N1B4_724 and Pf1N1B4_725 are separated by 218 nucleotides Pf1N1B4_725 and Pf1N1B4_726 are separated by 194 nucleotides
Pf1N1B4_723 - two-component system sensor protein, at 826,276 to 827,556
_723
Pf1N1B4_724 - DNA-binding response regulator ColR, at 827,546 to 828,229
_724
Pf1N1B4_725 - PAP2 superfamily protein, at 828,448 to 829,191
_725
Pf1N1B4_726 - Heat shock protein 60 family chaperone GroEL, at 829,386 to 831,029
_726
Position (kb) 828
829
830 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 827.547 kb on + strand at 827.548 kb on - strand at 827.723 kb on + strand, within Pf1N1B4_724 at 827.724 kb on - strand, within Pf1N1B4_724 at 827.724 kb on - strand, within Pf1N1B4_724 at 827.724 kb on - strand, within Pf1N1B4_724 at 827.724 kb on - strand, within Pf1N1B4_724 at 827.724 kb on - strand, within Pf1N1B4_724 at 827.827 kb on - strand, within Pf1N1B4_724 at 827.934 kb on + strand, within Pf1N1B4_724 at 828.174 kb on + strand at 828.244 kb on + strand at 828.252 kb on - strand at 828.276 kb on - strand at 828.316 kb on + strand at 828.317 kb on - strand at 828.317 kb on - strand at 828.497 kb on + strand at 828.583 kb on + strand, within Pf1N1B4_725 at 828.583 kb on + strand, within Pf1N1B4_725 at 828.584 kb on - strand at 828.622 kb on + strand, within Pf1N1B4_725 at 828.622 kb on + strand, within Pf1N1B4_725 at 828.623 kb on - strand, within Pf1N1B4_725 at 828.623 kb on - strand, within Pf1N1B4_725 at 828.859 kb on + strand, within Pf1N1B4_725 at 828.860 kb on - strand, within Pf1N1B4_725 at 828.860 kb on - strand, within Pf1N1B4_725 at 828.963 kb on - strand, within Pf1N1B4_725 at 829.120 kb on + strand at 829.120 kb on + strand at 829.121 kb on - strand at 829.123 kb on + strand at 829.123 kb on + strand at 829.123 kb on + strand at 829.123 kb on + strand at 829.123 kb on + strand at 829.123 kb on + strand at 829.123 kb on + strand at 829.123 kb on + strand at 829.124 kb on - strand at 829.124 kb on - strand at 829.124 kb on - strand at 829.124 kb on - strand at 829.124 kb on - strand at 829.126 kb on + strand at 829.126 kb on + strand at 829.126 kb on + strand at 829.126 kb on + strand at 829.126 kb on + strand at 829.126 kb on + strand at 829.126 kb on + strand at 829.126 kb on + strand at 829.127 kb on - strand at 829.127 kb on - strand at 829.127 kb on - strand at 829.127 kb on - strand at 829.127 kb on - strand at 829.160 kb on + strand at 829.160 kb on + strand at 829.161 kb on - strand at 829.161 kb on - strand at 829.161 kb on - strand at 829.192 kb on + strand at 829.193 kb on - strand at 829.193 kb on - strand at 829.202 kb on + strand at 829.202 kb on + strand at 829.203 kb on - strand at 829.203 kb on - strand at 829.203 kb on - strand at 829.247 kb on + strand at 829.330 kb on - strand at 829.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 2.5 mM remove 827,547 + -0.4 827,548 - -0.6 827,723 + Pf1N1B4_724 0.26 -1.6 827,724 - Pf1N1B4_724 0.26 +1.6 827,724 - Pf1N1B4_724 0.26 -2.3 827,724 - Pf1N1B4_724 0.26 -1.8 827,724 - Pf1N1B4_724 0.26 -2.0 827,724 - Pf1N1B4_724 0.26 -2.0 827,827 - Pf1N1B4_724 0.41 -1.0 827,934 + Pf1N1B4_724 0.57 -3.8 828,174 + -2.3 828,244 + -0.0 828,252 - -0.6 828,276 - -1.0 828,316 + -0.3 828,317 - +2.0 828,317 - -0.7 828,497 + -0.0 828,583 + Pf1N1B4_725 0.18 -2.8 828,583 + Pf1N1B4_725 0.18 -1.4 828,584 - -1.6 828,622 + Pf1N1B4_725 0.23 -2.3 828,622 + Pf1N1B4_725 0.23 -0.8 828,623 - Pf1N1B4_725 0.24 +1.0 828,623 - Pf1N1B4_725 0.24 +0.6 828,859 + Pf1N1B4_725 0.55 -2.8 828,860 - Pf1N1B4_725 0.55 +1.6 828,860 - Pf1N1B4_725 0.55 -0.0 828,963 - Pf1N1B4_725 0.69 -0.9 829,120 + +1.0 829,120 + +0.5 829,121 - -1.6 829,123 + +1.0 829,123 + +1.6 829,123 + +0.3 829,123 + -2.3 829,123 + -0.0 829,123 + -1.0 829,123 + +2.0 829,123 + -1.3 829,124 - -0.0 829,124 - +0.9 829,124 - -0.8 829,124 - -1.0 829,124 - -0.0 829,126 + +1.0 829,126 + +0.9 829,126 + -0.6 829,126 + -0.4 829,126 + -0.0 829,126 + -2.6 829,126 + +0.6 829,126 + +0.3 829,127 - -2.3 829,127 - -1.0 829,127 - -0.4 829,127 - -1.6 829,127 - +1.0 829,160 + +1.3 829,160 + -1.0 829,161 - +1.9 829,161 - -1.2 829,161 - -0.0 829,192 + -1.3 829,193 - -1.0 829,193 - +0.4 829,202 + -0.4 829,202 + +1.0 829,203 - +0.3 829,203 - -1.6 829,203 - -2.0 829,247 + -1.0 829,330 - +0.4 829,330 - +0.0
Or see this region's nucleotide sequence