Experiment: Aluminum chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4951 and Pf1N1B4_4952 are separated by 566 nucleotides Pf1N1B4_4952 and Pf1N1B4_4953 overlap by 4 nucleotides
Pf1N1B4_4951 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 5,487,711 to 5,488,073
_4951
Pf1N1B4_4952 - L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1), at 5,488,640 to 5,490,070
_4952
Pf1N1B4_4953 - Selenocysteine-specific translation elongation factor, at 5,490,067 to 5,491,986
_4953
Position (kb)
5488
5489
5490
5491 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5487.712 kb on + strand at 5487.713 kb on - strand at 5487.713 kb on - strand at 5487.716 kb on + strand at 5487.716 kb on + strand at 5487.716 kb on + strand at 5487.716 kb on + strand at 5487.716 kb on + strand at 5487.716 kb on + strand at 5487.717 kb on - strand at 5487.717 kb on - strand at 5487.717 kb on - strand at 5487.786 kb on + strand, within Pf1N1B4_4951 at 5487.787 kb on - strand at 5487.794 kb on + strand at 5487.813 kb on + strand, within Pf1N1B4_4951 at 5487.814 kb on - strand, within Pf1N1B4_4951 at 5487.814 kb on - strand, within Pf1N1B4_4951 at 5487.968 kb on - strand, within Pf1N1B4_4951 at 5487.970 kb on + strand, within Pf1N1B4_4951 at 5487.970 kb on + strand, within Pf1N1B4_4951 at 5488.073 kb on + strand at 5488.073 kb on + strand at 5488.074 kb on - strand at 5488.074 kb on - strand at 5488.076 kb on + strand at 5488.226 kb on - strand at 5488.363 kb on + strand at 5488.395 kb on + strand at 5488.395 kb on + strand at 5488.395 kb on + strand at 5488.396 kb on - strand at 5488.396 kb on - strand at 5488.412 kb on - strand at 5488.585 kb on + strand at 5488.834 kb on - strand, within Pf1N1B4_4952 at 5489.560 kb on - strand, within Pf1N1B4_4952 at 5489.779 kb on - strand, within Pf1N1B4_4952 at 5489.779 kb on - strand, within Pf1N1B4_4952 at 5490.191 kb on - strand at 5490.192 kb on + strand at 5490.192 kb on + strand at 5490.193 kb on - strand at 5490.196 kb on + strand at 5490.393 kb on + strand, within Pf1N1B4_4953
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 2.5 mM remove 5,487,712 + -1.2 5,487,713 - -0.3 5,487,713 - -0.3 5,487,716 + -0.1 5,487,716 + -0.7 5,487,716 + +1.1 5,487,716 + -1.1 5,487,716 + +0.3 5,487,716 + +1.1 5,487,717 - +0.1 5,487,717 - +0.1 5,487,717 - -0.7 5,487,786 + Pf1N1B4_4951 0.21 -0.7 5,487,787 - -2.2 5,487,794 + -1.1 5,487,813 + Pf1N1B4_4951 0.28 +2.1 5,487,814 - Pf1N1B4_4951 0.28 -0.7 5,487,814 - Pf1N1B4_4951 0.28 -0.2 5,487,968 - Pf1N1B4_4951 0.71 +0.4 5,487,970 + Pf1N1B4_4951 0.71 -1.5 5,487,970 + Pf1N1B4_4951 0.71 -0.5 5,488,073 + -0.9 5,488,073 + -0.1 5,488,074 - -1.5 5,488,074 - -1.0 5,488,076 + +0.9 5,488,226 - -2.7 5,488,363 + +0.9 5,488,395 + -1.1 5,488,395 + -0.7 5,488,395 + +0.8 5,488,396 - +0.1 5,488,396 - -0.7 5,488,412 - -0.7 5,488,585 + -1.7 5,488,834 - Pf1N1B4_4952 0.14 -0.8 5,489,560 - Pf1N1B4_4952 0.64 -1.2 5,489,779 - Pf1N1B4_4952 0.80 -2.2 5,489,779 - Pf1N1B4_4952 0.80 +0.5 5,490,191 - +0.7 5,490,192 + -3.0 5,490,192 + -0.7 5,490,193 - -0.2 5,490,196 + +0.3 5,490,393 + Pf1N1B4_4953 0.17 +1.0
Or see this region's nucleotide sequence