Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4952

Experiment: Aluminum chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4951 and Pf1N1B4_4952 are separated by 566 nucleotidesPf1N1B4_4952 and Pf1N1B4_4953 overlap by 4 nucleotides Pf1N1B4_4951 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 5,487,711 to 5,488,073 _4951 Pf1N1B4_4952 - L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1), at 5,488,640 to 5,490,070 _4952 Pf1N1B4_4953 - Selenocysteine-specific translation elongation factor, at 5,490,067 to 5,491,986 _4953 Position (kb) 5488 5489 5490 5491Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5487.712 kb on + strandat 5487.713 kb on - strandat 5487.713 kb on - strandat 5487.716 kb on + strandat 5487.716 kb on + strandat 5487.716 kb on + strandat 5487.716 kb on + strandat 5487.716 kb on + strandat 5487.716 kb on + strandat 5487.717 kb on - strandat 5487.717 kb on - strandat 5487.717 kb on - strandat 5487.786 kb on + strand, within Pf1N1B4_4951at 5487.787 kb on - strandat 5487.794 kb on + strandat 5487.813 kb on + strand, within Pf1N1B4_4951at 5487.814 kb on - strand, within Pf1N1B4_4951at 5487.814 kb on - strand, within Pf1N1B4_4951at 5487.968 kb on - strand, within Pf1N1B4_4951at 5487.970 kb on + strand, within Pf1N1B4_4951at 5487.970 kb on + strand, within Pf1N1B4_4951at 5488.073 kb on + strandat 5488.073 kb on + strandat 5488.074 kb on - strandat 5488.074 kb on - strandat 5488.076 kb on + strandat 5488.226 kb on - strandat 5488.363 kb on + strandat 5488.395 kb on + strandat 5488.395 kb on + strandat 5488.395 kb on + strandat 5488.396 kb on - strandat 5488.396 kb on - strandat 5488.412 kb on - strandat 5488.585 kb on + strandat 5488.834 kb on - strand, within Pf1N1B4_4952at 5489.560 kb on - strand, within Pf1N1B4_4952at 5489.779 kb on - strand, within Pf1N1B4_4952at 5489.779 kb on - strand, within Pf1N1B4_4952at 5490.191 kb on - strandat 5490.192 kb on + strandat 5490.192 kb on + strandat 5490.193 kb on - strandat 5490.196 kb on + strandat 5490.393 kb on + strand, within Pf1N1B4_4953

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 2.5 mM
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5,487,712 + -1.2
5,487,713 - -0.3
5,487,713 - -0.3
5,487,716 + -0.1
5,487,716 + -0.7
5,487,716 + +1.1
5,487,716 + -1.1
5,487,716 + +0.3
5,487,716 + +1.1
5,487,717 - +0.1
5,487,717 - +0.1
5,487,717 - -0.7
5,487,786 + Pf1N1B4_4951 0.21 -0.7
5,487,787 - -2.2
5,487,794 + -1.1
5,487,813 + Pf1N1B4_4951 0.28 +2.1
5,487,814 - Pf1N1B4_4951 0.28 -0.7
5,487,814 - Pf1N1B4_4951 0.28 -0.2
5,487,968 - Pf1N1B4_4951 0.71 +0.4
5,487,970 + Pf1N1B4_4951 0.71 -1.5
5,487,970 + Pf1N1B4_4951 0.71 -0.5
5,488,073 + -0.9
5,488,073 + -0.1
5,488,074 - -1.5
5,488,074 - -1.0
5,488,076 + +0.9
5,488,226 - -2.7
5,488,363 + +0.9
5,488,395 + -1.1
5,488,395 + -0.7
5,488,395 + +0.8
5,488,396 - +0.1
5,488,396 - -0.7
5,488,412 - -0.7
5,488,585 + -1.7
5,488,834 - Pf1N1B4_4952 0.14 -0.8
5,489,560 - Pf1N1B4_4952 0.64 -1.2
5,489,779 - Pf1N1B4_4952 0.80 -2.2
5,489,779 - Pf1N1B4_4952 0.80 +0.5
5,490,191 - +0.7
5,490,192 + -3.0
5,490,192 + -0.7
5,490,193 - -0.2
5,490,196 + +0.3
5,490,393 + Pf1N1B4_4953 0.17 +1.0

Or see this region's nucleotide sequence