Experiment: Aluminum chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4331 and Pf1N1B4_4332 are separated by 188 nucleotides Pf1N1B4_4332 and Pf1N1B4_4333 are separated by 50 nucleotides Pf1N1B4_4333 and Pf1N1B4_4334 are separated by 356 nucleotides
Pf1N1B4_4331 - Transporter, LysE family, at 4,791,582 to 4,792,199
_4331
Pf1N1B4_4332 - Transcriptional regulator, AsnC family, at 4,792,388 to 4,792,840
_4332
Pf1N1B4_4333 - hypothetical protein, at 4,792,891 to 4,793,112
_4333
Pf1N1B4_4334 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 4,793,469 to 4,794,452
_4334
Position (kb)
4792
4793
4794 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4792.053 kb on + strand at 4792.147 kb on - strand at 4792.148 kb on + strand at 4792.149 kb on - strand at 4792.149 kb on - strand at 4792.149 kb on - strand at 4792.149 kb on - strand at 4792.199 kb on + strand at 4792.200 kb on - strand at 4792.214 kb on + strand at 4792.214 kb on + strand at 4792.215 kb on - strand at 4792.215 kb on - strand at 4792.240 kb on + strand at 4792.300 kb on - strand at 4792.318 kb on - strand at 4792.348 kb on + strand at 4792.474 kb on + strand, within Pf1N1B4_4332 at 4792.697 kb on + strand, within Pf1N1B4_4332 at 4792.698 kb on - strand, within Pf1N1B4_4332 at 4792.893 kb on - strand at 4792.918 kb on + strand, within Pf1N1B4_4333 at 4792.919 kb on - strand, within Pf1N1B4_4333 at 4792.919 kb on - strand, within Pf1N1B4_4333 at 4792.979 kb on - strand, within Pf1N1B4_4333 at 4792.979 kb on - strand, within Pf1N1B4_4333 at 4793.046 kb on + strand, within Pf1N1B4_4333 at 4793.047 kb on - strand at 4793.134 kb on - strand at 4793.376 kb on - strand at 4793.388 kb on + strand at 4793.420 kb on + strand at 4793.421 kb on - strand at 4793.961 kb on + strand, within Pf1N1B4_4334 at 4793.961 kb on + strand, within Pf1N1B4_4334 at 4793.961 kb on + strand, within Pf1N1B4_4334 at 4793.962 kb on - strand, within Pf1N1B4_4334 at 4793.962 kb on - strand, within Pf1N1B4_4334
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 2.5 mM remove 4,792,053 + -0.5 4,792,147 - -0.2 4,792,148 + +0.5 4,792,149 - -0.0 4,792,149 - +0.2 4,792,149 - -0.5 4,792,149 - -1.5 4,792,199 + +0.4 4,792,200 - -0.5 4,792,214 + +1.8 4,792,214 + +2.3 4,792,215 - +1.0 4,792,215 - -2.5 4,792,240 + +0.4 4,792,300 - -0.2 4,792,318 - -0.4 4,792,348 + -0.5 4,792,474 + Pf1N1B4_4332 0.19 +1.1 4,792,697 + Pf1N1B4_4332 0.68 -0.2 4,792,698 - Pf1N1B4_4332 0.68 +0.5 4,792,893 - -0.1 4,792,918 + Pf1N1B4_4333 0.12 -0.5 4,792,919 - Pf1N1B4_4333 0.13 +1.7 4,792,919 - Pf1N1B4_4333 0.13 +0.5 4,792,979 - Pf1N1B4_4333 0.40 -2.5 4,792,979 - Pf1N1B4_4333 0.40 +2.8 4,793,046 + Pf1N1B4_4333 0.70 +1.8 4,793,047 - -2.1 4,793,134 - -0.5 4,793,376 - +1.3 4,793,388 + +0.5 4,793,420 + -0.5 4,793,421 - -0.5 4,793,961 + Pf1N1B4_4334 0.50 -1.1 4,793,961 + Pf1N1B4_4334 0.50 +0.5 4,793,961 + Pf1N1B4_4334 0.50 -0.9 4,793,962 - Pf1N1B4_4334 0.50 -2.1 4,793,962 - Pf1N1B4_4334 0.50 +1.0
Or see this region's nucleotide sequence