Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4132

Experiment: Aluminum chloride 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_4131 and Pf1N1B4_4132 overlap by 4 nucleotidesPf1N1B4_4132 and Pf1N1B4_4133 are separated by 90 nucleotides Pf1N1B4_4131 - Mobile element protein, at 4,572,187 to 4,572,507 _4131 Pf1N1B4_4132 - Mobile element protein, at 4,572,504 to 4,572,839 _4132 Pf1N1B4_4133 - Mobile element protein, at 4,572,930 to 4,573,388 _4133 Position (kb) 4572 4573Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4571.524 kb on + strandat 4571.525 kb on - strandat 4571.540 kb on + strandat 4571.563 kb on - strandat 4571.564 kb on + strandat 4571.564 kb on + strandat 4571.564 kb on + strandat 4571.564 kb on + strandat 4571.594 kb on + strandat 4571.651 kb on - strandat 4571.760 kb on + strandat 4571.760 kb on + strandat 4571.986 kb on + strandat 4571.986 kb on + strandat 4571.986 kb on + strandat 4571.987 kb on - strandat 4572.056 kb on + strandat 4572.056 kb on + strandat 4572.057 kb on - strandat 4572.088 kb on + strandat 4572.385 kb on - strand, within Pf1N1B4_4131at 4572.621 kb on + strand, within Pf1N1B4_4132at 4572.621 kb on + strand, within Pf1N1B4_4132at 4572.621 kb on + strand, within Pf1N1B4_4132at 4572.732 kb on - strand, within Pf1N1B4_4132at 4572.784 kb on + strand, within Pf1N1B4_4132at 4572.922 kb on + strandat 4573.074 kb on + strand, within Pf1N1B4_4133at 4573.074 kb on + strandat 4573.074 kb on + strand, within Pf1N1B4_4133at 4573.074 kb on + strand, within Pf1N1B4_4133at 4573.074 kb on + strandat 4573.074 kb on + strandat 4573.074 kb on + strand, within Pf1N1B4_4133at 4573.074 kb on + strand, within Pf1N1B4_4133at 4573.074 kb on + strand, within Pf1N1B4_4133at 4573.075 kb on - strandat 4573.075 kb on - strand, within Pf1N1B4_4133at 4573.288 kb on - strandat 4573.294 kb on - strand, within Pf1N1B4_4133at 4573.375 kb on + strandat 4573.376 kb on - strandat 4573.386 kb on + strandat 4573.386 kb on + strandat 4573.386 kb on + strandat 4573.386 kb on + strandat 4573.386 kb on + strandat 4573.386 kb on + strandat 4573.387 kb on - strandat 4573.387 kb on - strandat 4573.387 kb on - strandat 4573.387 kb on - strandat 4573.434 kb on + strandat 4573.435 kb on - strandat 4573.435 kb on - strandat 4573.435 kb on - strandat 4573.679 kb on + strandat 4573.795 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 2.5 mM
remove
4,571,524 + -1.4
4,571,525 - -0.4
4,571,540 + +0.0
4,571,563 - -1.4
4,571,564 + -1.4
4,571,564 + +1.4
4,571,564 + -2.0
4,571,564 + -2.0
4,571,594 + -1.4
4,571,651 - +1.2
4,571,760 + -1.2
4,571,760 + -2.0
4,571,986 + +1.2
4,571,986 + +0.3
4,571,986 + -2.0
4,571,987 - +0.3
4,572,056 + +1.6
4,572,056 + +0.7
4,572,057 - -0.5
4,572,088 + -0.4
4,572,385 - Pf1N1B4_4131 0.62 +0.9
4,572,621 + Pf1N1B4_4132 0.35 -1.7
4,572,621 + Pf1N1B4_4132 0.35 -0.7
4,572,621 + Pf1N1B4_4132 0.35 -0.4
4,572,732 - Pf1N1B4_4132 0.68 -1.2
4,572,784 + Pf1N1B4_4132 0.83 -1.4
4,572,922 + +0.6
4,573,074 + Pf1N1B4_4133 0.31 +1.4
4,573,074 + +1.6
4,573,074 + Pf1N1B4_4133 0.31 -2.0
4,573,074 + Pf1N1B4_4133 0.31 +0.4
4,573,074 + +2.0
4,573,074 + +1.0
4,573,074 + Pf1N1B4_4133 0.31 +0.2
4,573,074 + Pf1N1B4_4133 0.31 +0.7
4,573,074 + Pf1N1B4_4133 0.31 +1.0
4,573,075 - +0.6
4,573,075 - Pf1N1B4_4133 0.32 -0.4
4,573,288 - +1.0
4,573,294 - Pf1N1B4_4133 0.79 +1.2
4,573,375 + -0.1
4,573,376 - -1.4
4,573,386 + +1.6
4,573,386 + +0.5
4,573,386 + +1.6
4,573,386 + -1.8
4,573,386 + +1.1
4,573,386 + +1.1
4,573,387 - +0.9
4,573,387 - -1.4
4,573,387 - +0.6
4,573,387 - +1.1
4,573,434 + -0.7
4,573,435 - +0.4
4,573,435 - -1.4
4,573,435 - -1.4
4,573,679 + -3.0
4,573,795 + -1.7

Or see this region's nucleotide sequence