Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2783

Experiment: Aluminum chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2782 and Pf1N1B4_2783 are separated by 40 nucleotidesPf1N1B4_2783 and Pf1N1B4_2784 are separated by 70 nucleotidesPf1N1B4_2784 and Pf1N1B4_2785 are separated by 205 nucleotides Pf1N1B4_2782 - Mobile element protein, at 3,126,989 to 3,128,131 _2782 Pf1N1B4_2783 - Transcription elongation factor GreB-related protein, at 3,128,172 to 3,128,666 _2783 Pf1N1B4_2784 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 3,128,737 to 3,129,093 _2784 Pf1N1B4_2785 - putative outermembrane protein, at 3,129,299 to 3,131,152 _2785 Position (kb) 3128 3129Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3127.796 kb on + strand, within Pf1N1B4_2782at 3128.129 kb on + strandat 3128.129 kb on + strandat 3128.129 kb on + strandat 3128.138 kb on + strandat 3128.148 kb on + strandat 3128.148 kb on + strandat 3128.449 kb on + strand, within Pf1N1B4_2783at 3128.581 kb on + strand, within Pf1N1B4_2783at 3128.582 kb on - strand, within Pf1N1B4_2783at 3128.582 kb on - strand, within Pf1N1B4_2783at 3128.582 kb on - strand, within Pf1N1B4_2783at 3128.639 kb on + strandat 3128.640 kb on - strandat 3128.682 kb on + strandat 3128.682 kb on + strandat 3128.682 kb on + strandat 3128.683 kb on - strandat 3128.683 kb on - strandat 3128.683 kb on - strandat 3128.683 kb on - strandat 3128.683 kb on - strandat 3128.710 kb on - strandat 3128.710 kb on - strandat 3128.710 kb on - strandat 3128.729 kb on + strandat 3128.738 kb on + strandat 3128.738 kb on + strandat 3128.738 kb on + strandat 3128.738 kb on + strandat 3128.822 kb on + strand, within Pf1N1B4_2784at 3128.822 kb on + strand, within Pf1N1B4_2784at 3128.823 kb on - strand, within Pf1N1B4_2784at 3128.823 kb on - strand, within Pf1N1B4_2784at 3128.892 kb on - strand, within Pf1N1B4_2784at 3128.892 kb on - strand, within Pf1N1B4_2784at 3128.910 kb on - strand, within Pf1N1B4_2784at 3129.123 kb on + strandat 3129.134 kb on + strandat 3129.134 kb on + strandat 3129.135 kb on - strandat 3129.135 kb on - strandat 3129.155 kb on + strandat 3129.155 kb on + strandat 3129.155 kb on + strandat 3129.155 kb on + strandat 3129.155 kb on + strandat 3129.155 kb on + strandat 3129.155 kb on + strandat 3129.155 kb on + strandat 3129.155 kb on + strandat 3129.155 kb on + strandat 3129.155 kb on + strandat 3129.156 kb on - strandat 3129.156 kb on - strandat 3129.156 kb on - strandat 3129.156 kb on - strandat 3129.156 kb on - strandat 3129.156 kb on - strandat 3129.156 kb on - strandat 3129.156 kb on - strandat 3129.174 kb on + strandat 3129.175 kb on - strandat 3129.303 kb on + strandat 3129.303 kb on + strandat 3129.309 kb on + strandat 3129.310 kb on - strandat 3129.326 kb on + strandat 3129.326 kb on + strandat 3129.326 kb on + strandat 3129.327 kb on - strandat 3129.327 kb on - strandat 3129.327 kb on - strandat 3129.327 kb on - strandat 3129.327 kb on - strandat 3129.456 kb on + strandat 3129.456 kb on + strandat 3129.457 kb on - strandat 3129.457 kb on - strandat 3129.457 kb on - strandat 3129.457 kb on - strandat 3129.457 kb on - strandat 3129.457 kb on - strandat 3129.457 kb on - strandat 3129.503 kb on + strand, within Pf1N1B4_2785at 3129.504 kb on - strand, within Pf1N1B4_2785at 3129.559 kb on + strand, within Pf1N1B4_2785at 3129.559 kb on + strand, within Pf1N1B4_2785at 3129.559 kb on + strand, within Pf1N1B4_2785at 3129.560 kb on - strand, within Pf1N1B4_2785at 3129.560 kb on - strand, within Pf1N1B4_2785at 3129.598 kb on + strand, within Pf1N1B4_2785at 3129.599 kb on - strandat 3129.599 kb on - strand, within Pf1N1B4_2785

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 2.5 mM
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3,127,796 + Pf1N1B4_2782 0.71 -0.8
3,128,129 + +0.5
3,128,129 + +0.1
3,128,129 + -1.8
3,128,138 + +0.2
3,128,148 + +0.8
3,128,148 + +0.2
3,128,449 + Pf1N1B4_2783 0.56 +0.0
3,128,581 + Pf1N1B4_2783 0.83 -2.4
3,128,582 - Pf1N1B4_2783 0.83 -0.9
3,128,582 - Pf1N1B4_2783 0.83 -1.1
3,128,582 - Pf1N1B4_2783 0.83 +1.2
3,128,639 + +0.2
3,128,640 - -2.1
3,128,682 + +0.2
3,128,682 + +1.8
3,128,682 + -1.4
3,128,683 - +0.6
3,128,683 - +0.4
3,128,683 - +0.2
3,128,683 - +1.6
3,128,683 - -1.1
3,128,710 - +0.2
3,128,710 - +0.2
3,128,710 - +0.2
3,128,729 + -0.8
3,128,738 + -1.8
3,128,738 + +2.2
3,128,738 + +0.4
3,128,738 + -0.8
3,128,822 + Pf1N1B4_2784 0.24 -0.8
3,128,822 + Pf1N1B4_2784 0.24 +0.8
3,128,823 - Pf1N1B4_2784 0.24 +1.6
3,128,823 - Pf1N1B4_2784 0.24 +0.5
3,128,892 - Pf1N1B4_2784 0.43 -0.8
3,128,892 - Pf1N1B4_2784 0.43 -0.0
3,128,910 - Pf1N1B4_2784 0.48 -3.6
3,129,123 + +0.2
3,129,134 + +1.0
3,129,134 + +0.8
3,129,135 - +0.2
3,129,135 - -1.7
3,129,155 + -1.4
3,129,155 + -0.2
3,129,155 + -0.9
3,129,155 + +0.7
3,129,155 + -1.2
3,129,155 + +1.8
3,129,155 + +0.2
3,129,155 + -0.8
3,129,155 + -0.5
3,129,155 + -1.8
3,129,155 + -0.8
3,129,156 - -0.5
3,129,156 - -0.8
3,129,156 - +0.4
3,129,156 - +1.2
3,129,156 - +0.2
3,129,156 - +0.7
3,129,156 - -0.8
3,129,156 - -1.8
3,129,174 + +0.4
3,129,175 - -1.8
3,129,303 + +0.5
3,129,303 + -0.8
3,129,309 + -0.4
3,129,310 - -1.8
3,129,326 + -0.8
3,129,326 + +1.6
3,129,326 + +1.0
3,129,327 - +1.4
3,129,327 - -1.2
3,129,327 - -1.0
3,129,327 - +0.2
3,129,327 - -1.4
3,129,456 + +1.4
3,129,456 + -0.8
3,129,457 - +0.2
3,129,457 - +0.5
3,129,457 - +0.6
3,129,457 - +2.5
3,129,457 - -1.4
3,129,457 - -1.4
3,129,457 - -1.4
3,129,503 + Pf1N1B4_2785 0.11 +1.0
3,129,504 - Pf1N1B4_2785 0.11 +2.2
3,129,559 + Pf1N1B4_2785 0.14 +0.2
3,129,559 + Pf1N1B4_2785 0.14 +1.2
3,129,559 + Pf1N1B4_2785 0.14 +0.5
3,129,560 - Pf1N1B4_2785 0.14 -0.8
3,129,560 - Pf1N1B4_2785 0.14 +0.6
3,129,598 + Pf1N1B4_2785 0.16 -0.2
3,129,599 - +1.0
3,129,599 - Pf1N1B4_2785 0.16 +0.6

Or see this region's nucleotide sequence