Experiment: Aluminum chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2782 and Pf1N1B4_2783 are separated by 40 nucleotides Pf1N1B4_2783 and Pf1N1B4_2784 are separated by 70 nucleotides Pf1N1B4_2784 and Pf1N1B4_2785 are separated by 205 nucleotides
Pf1N1B4_2782 - Mobile element protein, at 3,126,989 to 3,128,131
_2782
Pf1N1B4_2783 - Transcription elongation factor GreB-related protein, at 3,128,172 to 3,128,666
_2783
Pf1N1B4_2784 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 3,128,737 to 3,129,093
_2784
Pf1N1B4_2785 - putative outermembrane protein, at 3,129,299 to 3,131,152
_2785
Position (kb)
3128
3129 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3127.796 kb on + strand, within Pf1N1B4_2782 at 3128.129 kb on + strand at 3128.129 kb on + strand at 3128.129 kb on + strand at 3128.138 kb on + strand at 3128.148 kb on + strand at 3128.148 kb on + strand at 3128.449 kb on + strand, within Pf1N1B4_2783 at 3128.581 kb on + strand, within Pf1N1B4_2783 at 3128.582 kb on - strand, within Pf1N1B4_2783 at 3128.582 kb on - strand, within Pf1N1B4_2783 at 3128.582 kb on - strand, within Pf1N1B4_2783 at 3128.639 kb on + strand at 3128.640 kb on - strand at 3128.682 kb on + strand at 3128.682 kb on + strand at 3128.682 kb on + strand at 3128.683 kb on - strand at 3128.683 kb on - strand at 3128.683 kb on - strand at 3128.683 kb on - strand at 3128.683 kb on - strand at 3128.710 kb on - strand at 3128.710 kb on - strand at 3128.710 kb on - strand at 3128.729 kb on + strand at 3128.738 kb on + strand at 3128.738 kb on + strand at 3128.738 kb on + strand at 3128.738 kb on + strand at 3128.822 kb on + strand, within Pf1N1B4_2784 at 3128.822 kb on + strand, within Pf1N1B4_2784 at 3128.823 kb on - strand, within Pf1N1B4_2784 at 3128.823 kb on - strand, within Pf1N1B4_2784 at 3128.892 kb on - strand, within Pf1N1B4_2784 at 3128.892 kb on - strand, within Pf1N1B4_2784 at 3128.910 kb on - strand, within Pf1N1B4_2784 at 3129.123 kb on + strand at 3129.134 kb on + strand at 3129.134 kb on + strand at 3129.135 kb on - strand at 3129.135 kb on - strand at 3129.155 kb on + strand at 3129.155 kb on + strand at 3129.155 kb on + strand at 3129.155 kb on + strand at 3129.155 kb on + strand at 3129.155 kb on + strand at 3129.155 kb on + strand at 3129.155 kb on + strand at 3129.155 kb on + strand at 3129.155 kb on + strand at 3129.155 kb on + strand at 3129.156 kb on - strand at 3129.156 kb on - strand at 3129.156 kb on - strand at 3129.156 kb on - strand at 3129.156 kb on - strand at 3129.156 kb on - strand at 3129.156 kb on - strand at 3129.156 kb on - strand at 3129.174 kb on + strand at 3129.175 kb on - strand at 3129.303 kb on + strand at 3129.303 kb on + strand at 3129.309 kb on + strand at 3129.310 kb on - strand at 3129.326 kb on + strand at 3129.326 kb on + strand at 3129.326 kb on + strand at 3129.327 kb on - strand at 3129.327 kb on - strand at 3129.327 kb on - strand at 3129.327 kb on - strand at 3129.327 kb on - strand at 3129.456 kb on + strand at 3129.456 kb on + strand at 3129.457 kb on - strand at 3129.457 kb on - strand at 3129.457 kb on - strand at 3129.457 kb on - strand at 3129.457 kb on - strand at 3129.457 kb on - strand at 3129.457 kb on - strand at 3129.503 kb on + strand, within Pf1N1B4_2785 at 3129.504 kb on - strand, within Pf1N1B4_2785 at 3129.559 kb on + strand, within Pf1N1B4_2785 at 3129.559 kb on + strand, within Pf1N1B4_2785 at 3129.559 kb on + strand, within Pf1N1B4_2785 at 3129.560 kb on - strand, within Pf1N1B4_2785 at 3129.560 kb on - strand, within Pf1N1B4_2785 at 3129.598 kb on + strand, within Pf1N1B4_2785 at 3129.599 kb on - strand at 3129.599 kb on - strand, within Pf1N1B4_2785
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 2.5 mM remove 3,127,796 + Pf1N1B4_2782 0.71 -0.8 3,128,129 + +0.5 3,128,129 + +0.1 3,128,129 + -1.8 3,128,138 + +0.2 3,128,148 + +0.8 3,128,148 + +0.2 3,128,449 + Pf1N1B4_2783 0.56 +0.0 3,128,581 + Pf1N1B4_2783 0.83 -2.4 3,128,582 - Pf1N1B4_2783 0.83 -0.9 3,128,582 - Pf1N1B4_2783 0.83 -1.1 3,128,582 - Pf1N1B4_2783 0.83 +1.2 3,128,639 + +0.2 3,128,640 - -2.1 3,128,682 + +0.2 3,128,682 + +1.8 3,128,682 + -1.4 3,128,683 - +0.6 3,128,683 - +0.4 3,128,683 - +0.2 3,128,683 - +1.6 3,128,683 - -1.1 3,128,710 - +0.2 3,128,710 - +0.2 3,128,710 - +0.2 3,128,729 + -0.8 3,128,738 + -1.8 3,128,738 + +2.2 3,128,738 + +0.4 3,128,738 + -0.8 3,128,822 + Pf1N1B4_2784 0.24 -0.8 3,128,822 + Pf1N1B4_2784 0.24 +0.8 3,128,823 - Pf1N1B4_2784 0.24 +1.6 3,128,823 - Pf1N1B4_2784 0.24 +0.5 3,128,892 - Pf1N1B4_2784 0.43 -0.8 3,128,892 - Pf1N1B4_2784 0.43 -0.0 3,128,910 - Pf1N1B4_2784 0.48 -3.6 3,129,123 + +0.2 3,129,134 + +1.0 3,129,134 + +0.8 3,129,135 - +0.2 3,129,135 - -1.7 3,129,155 + -1.4 3,129,155 + -0.2 3,129,155 + -0.9 3,129,155 + +0.7 3,129,155 + -1.2 3,129,155 + +1.8 3,129,155 + +0.2 3,129,155 + -0.8 3,129,155 + -0.5 3,129,155 + -1.8 3,129,155 + -0.8 3,129,156 - -0.5 3,129,156 - -0.8 3,129,156 - +0.4 3,129,156 - +1.2 3,129,156 - +0.2 3,129,156 - +0.7 3,129,156 - -0.8 3,129,156 - -1.8 3,129,174 + +0.4 3,129,175 - -1.8 3,129,303 + +0.5 3,129,303 + -0.8 3,129,309 + -0.4 3,129,310 - -1.8 3,129,326 + -0.8 3,129,326 + +1.6 3,129,326 + +1.0 3,129,327 - +1.4 3,129,327 - -1.2 3,129,327 - -1.0 3,129,327 - +0.2 3,129,327 - -1.4 3,129,456 + +1.4 3,129,456 + -0.8 3,129,457 - +0.2 3,129,457 - +0.5 3,129,457 - +0.6 3,129,457 - +2.5 3,129,457 - -1.4 3,129,457 - -1.4 3,129,457 - -1.4 3,129,503 + Pf1N1B4_2785 0.11 +1.0 3,129,504 - Pf1N1B4_2785 0.11 +2.2 3,129,559 + Pf1N1B4_2785 0.14 +0.2 3,129,559 + Pf1N1B4_2785 0.14 +1.2 3,129,559 + Pf1N1B4_2785 0.14 +0.5 3,129,560 - Pf1N1B4_2785 0.14 -0.8 3,129,560 - Pf1N1B4_2785 0.14 +0.6 3,129,598 + Pf1N1B4_2785 0.16 -0.2 3,129,599 - +1.0 3,129,599 - Pf1N1B4_2785 0.16 +0.6
Or see this region's nucleotide sequence