Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2293

Experiment: Aluminum chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2292 and Pf1N1B4_2293 are separated by 222 nucleotidesPf1N1B4_2293 and Pf1N1B4_2294 overlap by 1 nucleotides Pf1N1B4_2292 - Transcriptional regulators, LysR family, at 2,608,803 to 2,609,666 _2292 Pf1N1B4_2293 - Ferric iron ABC transporter, ATP-binding protein, at 2,609,889 to 2,610,965 _2293 Pf1N1B4_2294 - Ferric iron ABC transporter, permease protein, at 2,610,965 to 2,612,689 _2294 Position (kb) 2609 2610 2611Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2608.947 kb on + strand, within Pf1N1B4_2292at 2608.947 kb on + strand, within Pf1N1B4_2292at 2609.101 kb on - strandat 2609.101 kb on - strand, within Pf1N1B4_2292at 2609.101 kb on - strand, within Pf1N1B4_2292at 2609.103 kb on + strand, within Pf1N1B4_2292at 2609.103 kb on + strand, within Pf1N1B4_2292at 2609.103 kb on + strand, within Pf1N1B4_2292at 2609.103 kb on + strand, within Pf1N1B4_2292at 2609.103 kb on + strand, within Pf1N1B4_2292at 2609.103 kb on + strand, within Pf1N1B4_2292at 2609.103 kb on + strand, within Pf1N1B4_2292at 2609.104 kb on - strand, within Pf1N1B4_2292at 2609.104 kb on - strand, within Pf1N1B4_2292at 2609.104 kb on - strandat 2609.104 kb on - strand, within Pf1N1B4_2292at 2609.104 kb on - strand, within Pf1N1B4_2292at 2609.104 kb on - strand, within Pf1N1B4_2292at 2609.104 kb on - strand, within Pf1N1B4_2292at 2609.104 kb on - strand, within Pf1N1B4_2292at 2609.303 kb on + strand, within Pf1N1B4_2292at 2609.303 kb on + strand, within Pf1N1B4_2292at 2609.304 kb on - strand, within Pf1N1B4_2292at 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.357 kb on + strandat 2609.357 kb on + strand, within Pf1N1B4_2292at 2609.358 kb on - strand, within Pf1N1B4_2292at 2609.358 kb on - strand, within Pf1N1B4_2292at 2609.358 kb on - strand, within Pf1N1B4_2292at 2609.358 kb on - strand, within Pf1N1B4_2292at 2609.358 kb on - strand, within Pf1N1B4_2292at 2609.358 kb on - strand, within Pf1N1B4_2292at 2609.358 kb on - strand, within Pf1N1B4_2292at 2609.358 kb on - strand, within Pf1N1B4_2292at 2609.358 kb on - strand, within Pf1N1B4_2292at 2609.358 kb on - strand, within Pf1N1B4_2292at 2609.583 kb on + strandat 2609.583 kb on + strandat 2609.584 kb on - strandat 2609.584 kb on - strandat 2609.584 kb on - strandat 2609.589 kb on + strandat 2609.665 kb on - strandat 2609.800 kb on + strandat 2609.800 kb on + strandat 2609.800 kb on + strandat 2609.801 kb on - strandat 2609.801 kb on - strandat 2609.854 kb on + strandat 2609.854 kb on + strandat 2609.854 kb on + strandat 2609.855 kb on - strandat 2610.025 kb on + strand, within Pf1N1B4_2293at 2610.025 kb on + strand, within Pf1N1B4_2293at 2610.025 kb on + strand, within Pf1N1B4_2293at 2610.105 kb on + strand, within Pf1N1B4_2293at 2610.105 kb on + strand, within Pf1N1B4_2293at 2610.105 kb on + strand, within Pf1N1B4_2293at 2610.106 kb on - strand, within Pf1N1B4_2293at 2610.106 kb on - strand, within Pf1N1B4_2293at 2610.174 kb on + strand, within Pf1N1B4_2293at 2610.306 kb on + strand, within Pf1N1B4_2293at 2610.307 kb on - strand, within Pf1N1B4_2293at 2610.582 kb on + strand, within Pf1N1B4_2293at 2610.582 kb on + strand, within Pf1N1B4_2293at 2611.262 kb on + strand, within Pf1N1B4_2294at 2611.262 kb on + strand, within Pf1N1B4_2294at 2611.262 kb on + strand, within Pf1N1B4_2294at 2611.262 kb on + strand, within Pf1N1B4_2294at 2611.262 kb on + strand, within Pf1N1B4_2294at 2611.263 kb on - strand, within Pf1N1B4_2294at 2611.263 kb on - strand, within Pf1N1B4_2294at 2611.288 kb on + strand, within Pf1N1B4_2294at 2611.288 kb on + strand, within Pf1N1B4_2294at 2611.288 kb on + strand, within Pf1N1B4_2294at 2611.288 kb on + strand, within Pf1N1B4_2294at 2611.289 kb on - strand, within Pf1N1B4_2294at 2611.289 kb on - strand, within Pf1N1B4_2294at 2611.289 kb on - strand, within Pf1N1B4_2294at 2611.289 kb on - strand, within Pf1N1B4_2294at 2611.289 kb on - strand, within Pf1N1B4_2294at 2611.289 kb on - strand, within Pf1N1B4_2294at 2611.289 kb on - strand, within Pf1N1B4_2294at 2611.376 kb on + strand, within Pf1N1B4_2294at 2611.377 kb on - strand, within Pf1N1B4_2294at 2611.377 kb on - strand, within Pf1N1B4_2294at 2611.423 kb on + strand, within Pf1N1B4_2294at 2611.423 kb on + strand, within Pf1N1B4_2294at 2611.428 kb on - strand, within Pf1N1B4_2294at 2611.428 kb on - strandat 2611.463 kb on + strand, within Pf1N1B4_2294at 2611.463 kb on + strand, within Pf1N1B4_2294at 2611.463 kb on + strand, within Pf1N1B4_2294at 2611.463 kb on + strand, within Pf1N1B4_2294at 2611.463 kb on + strand, within Pf1N1B4_2294at 2611.464 kb on - strand, within Pf1N1B4_2294at 2611.464 kb on - strand, within Pf1N1B4_2294at 2611.464 kb on - strand, within Pf1N1B4_2294at 2611.464 kb on - strand, within Pf1N1B4_2294at 2611.464 kb on - strand, within Pf1N1B4_2294at 2611.464 kb on - strand, within Pf1N1B4_2294at 2611.464 kb on - strand, within Pf1N1B4_2294at 2611.703 kb on + strand, within Pf1N1B4_2294at 2611.704 kb on - strand, within Pf1N1B4_2294at 2611.704 kb on - strand, within Pf1N1B4_2294at 2611.704 kb on - strand, within Pf1N1B4_2294at 2611.883 kb on + strand, within Pf1N1B4_2294at 2611.884 kb on - strand, within Pf1N1B4_2294at 2611.884 kb on - strand, within Pf1N1B4_2294

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 2.5 mM
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2,608,947 + Pf1N1B4_2292 0.17 -1.2
2,608,947 + Pf1N1B4_2292 0.17 +0.4
2,609,101 - +1.4
2,609,101 - Pf1N1B4_2292 0.34 +0.4
2,609,101 - Pf1N1B4_2292 0.34 +0.4
2,609,103 + Pf1N1B4_2292 0.35 -0.6
2,609,103 + Pf1N1B4_2292 0.35 +0.4
2,609,103 + Pf1N1B4_2292 0.35 +0.1
2,609,103 + Pf1N1B4_2292 0.35 +0.4
2,609,103 + Pf1N1B4_2292 0.35 +1.6
2,609,103 + Pf1N1B4_2292 0.35 -1.6
2,609,103 + Pf1N1B4_2292 0.35 +0.4
2,609,104 - Pf1N1B4_2292 0.35 -1.6
2,609,104 - Pf1N1B4_2292 0.35 -2.2
2,609,104 - -0.6
2,609,104 - Pf1N1B4_2292 0.35 -0.6
2,609,104 - Pf1N1B4_2292 0.35 +0.9
2,609,104 - Pf1N1B4_2292 0.35 +0.6
2,609,104 - Pf1N1B4_2292 0.35 +1.7
2,609,104 - Pf1N1B4_2292 0.35 +0.9
2,609,303 + Pf1N1B4_2292 0.58 +0.9
2,609,303 + Pf1N1B4_2292 0.58 +0.4
2,609,304 - Pf1N1B4_2292 0.58 +0.4
2,609,357 + Pf1N1B4_2292 0.64 +0.2
2,609,357 + Pf1N1B4_2292 0.64 -1.2
2,609,357 + Pf1N1B4_2292 0.64 -0.1
2,609,357 + Pf1N1B4_2292 0.64 -0.2
2,609,357 + Pf1N1B4_2292 0.64 +0.4
2,609,357 + Pf1N1B4_2292 0.64 +2.7
2,609,357 + Pf1N1B4_2292 0.64 +0.4
2,609,357 + Pf1N1B4_2292 0.64 +0.6
2,609,357 + Pf1N1B4_2292 0.64 -0.2
2,609,357 + Pf1N1B4_2292 0.64 +1.9
2,609,357 + Pf1N1B4_2292 0.64 -2.8
2,609,357 + Pf1N1B4_2292 0.64 +0.4
2,609,357 + Pf1N1B4_2292 0.64 -2.6
2,609,357 + Pf1N1B4_2292 0.64 +1.4
2,609,357 + Pf1N1B4_2292 0.64 +0.4
2,609,357 + +0.8
2,609,357 + Pf1N1B4_2292 0.64 -2.4
2,609,358 - Pf1N1B4_2292 0.64 -0.4
2,609,358 - Pf1N1B4_2292 0.64 -1.6
2,609,358 - Pf1N1B4_2292 0.64 +0.8
2,609,358 - Pf1N1B4_2292 0.64 -2.4
2,609,358 - Pf1N1B4_2292 0.64 -1.2
2,609,358 - Pf1N1B4_2292 0.64 -1.6
2,609,358 - Pf1N1B4_2292 0.64 +0.9
2,609,358 - Pf1N1B4_2292 0.64 -0.6
2,609,358 - Pf1N1B4_2292 0.64 +1.2
2,609,358 - Pf1N1B4_2292 0.64 +1.8
2,609,583 + +1.6
2,609,583 + +0.8
2,609,584 - +0.8
2,609,584 - +0.4
2,609,584 - +1.4
2,609,589 + -0.2
2,609,665 - -0.2
2,609,800 + -1.0
2,609,800 + +2.4
2,609,800 + +0.4
2,609,801 - +0.4
2,609,801 - -1.0
2,609,854 + +1.8
2,609,854 + -1.1
2,609,854 + -1.0
2,609,855 - -1.8
2,610,025 + Pf1N1B4_2293 0.13 -2.6
2,610,025 + Pf1N1B4_2293 0.13 +1.1
2,610,025 + Pf1N1B4_2293 0.13 +0.2
2,610,105 + Pf1N1B4_2293 0.20 +0.7
2,610,105 + Pf1N1B4_2293 0.20 +0.1
2,610,105 + Pf1N1B4_2293 0.20 -0.8
2,610,106 - Pf1N1B4_2293 0.20 -1.0
2,610,106 - Pf1N1B4_2293 0.20 -1.2
2,610,174 + Pf1N1B4_2293 0.26 -1.6
2,610,306 + Pf1N1B4_2293 0.39 +0.9
2,610,307 - Pf1N1B4_2293 0.39 -1.6
2,610,582 + Pf1N1B4_2293 0.64 -2.0
2,610,582 + Pf1N1B4_2293 0.64 +0.4
2,611,262 + Pf1N1B4_2294 0.17 +0.4
2,611,262 + Pf1N1B4_2294 0.17 -0.2
2,611,262 + Pf1N1B4_2294 0.17 -1.1
2,611,262 + Pf1N1B4_2294 0.17 -1.0
2,611,262 + Pf1N1B4_2294 0.17 +0.8
2,611,263 - Pf1N1B4_2294 0.17 -1.2
2,611,263 - Pf1N1B4_2294 0.17 +0.4
2,611,288 + Pf1N1B4_2294 0.19 -0.2
2,611,288 + Pf1N1B4_2294 0.19 +0.6
2,611,288 + Pf1N1B4_2294 0.19 -1.2
2,611,288 + Pf1N1B4_2294 0.19 -0.6
2,611,289 - Pf1N1B4_2294 0.19 -0.6
2,611,289 - Pf1N1B4_2294 0.19 +1.4
2,611,289 - Pf1N1B4_2294 0.19 -0.6
2,611,289 - Pf1N1B4_2294 0.19 -1.6
2,611,289 - Pf1N1B4_2294 0.19 -1.6
2,611,289 - Pf1N1B4_2294 0.19 +0.9
2,611,289 - Pf1N1B4_2294 0.19 -0.3
2,611,376 + Pf1N1B4_2294 0.24 +0.5
2,611,377 - Pf1N1B4_2294 0.24 -1.2
2,611,377 - Pf1N1B4_2294 0.24 +1.1
2,611,423 + Pf1N1B4_2294 0.27 +0.1
2,611,423 + Pf1N1B4_2294 0.27 -1.2
2,611,428 - Pf1N1B4_2294 0.27 +0.4
2,611,428 - +0.4
2,611,463 + Pf1N1B4_2294 0.29 -0.6
2,611,463 + Pf1N1B4_2294 0.29 +1.4
2,611,463 + Pf1N1B4_2294 0.29 -0.8
2,611,463 + Pf1N1B4_2294 0.29 -1.0
2,611,463 + Pf1N1B4_2294 0.29 +0.4
2,611,464 - Pf1N1B4_2294 0.29 +1.8
2,611,464 - Pf1N1B4_2294 0.29 +0.1
2,611,464 - Pf1N1B4_2294 0.29 -0.2
2,611,464 - Pf1N1B4_2294 0.29 +0.9
2,611,464 - Pf1N1B4_2294 0.29 -0.9
2,611,464 - Pf1N1B4_2294 0.29 -0.2
2,611,464 - Pf1N1B4_2294 0.29 -2.2
2,611,703 + Pf1N1B4_2294 0.43 +0.4
2,611,704 - Pf1N1B4_2294 0.43 +0.1
2,611,704 - Pf1N1B4_2294 0.43 +0.0
2,611,704 - Pf1N1B4_2294 0.43 -0.3
2,611,883 + Pf1N1B4_2294 0.53 -0.6
2,611,884 - Pf1N1B4_2294 0.53 -0.6
2,611,884 - Pf1N1B4_2294 0.53 +0.9

Or see this region's nucleotide sequence