Experiment: Aluminum chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2292 and Pf1N1B4_2293 are separated by 222 nucleotides Pf1N1B4_2293 and Pf1N1B4_2294 overlap by 1 nucleotides
Pf1N1B4_2292 - Transcriptional regulators, LysR family, at 2,608,803 to 2,609,666
_2292
Pf1N1B4_2293 - Ferric iron ABC transporter, ATP-binding protein, at 2,609,889 to 2,610,965
_2293
Pf1N1B4_2294 - Ferric iron ABC transporter, permease protein, at 2,610,965 to 2,612,689
_2294
Position (kb)
2609
2610
2611 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2608.947 kb on + strand, within Pf1N1B4_2292 at 2608.947 kb on + strand, within Pf1N1B4_2292 at 2609.101 kb on - strand at 2609.101 kb on - strand, within Pf1N1B4_2292 at 2609.101 kb on - strand, within Pf1N1B4_2292 at 2609.103 kb on + strand, within Pf1N1B4_2292 at 2609.103 kb on + strand, within Pf1N1B4_2292 at 2609.103 kb on + strand, within Pf1N1B4_2292 at 2609.103 kb on + strand, within Pf1N1B4_2292 at 2609.103 kb on + strand, within Pf1N1B4_2292 at 2609.103 kb on + strand, within Pf1N1B4_2292 at 2609.103 kb on + strand, within Pf1N1B4_2292 at 2609.104 kb on - strand, within Pf1N1B4_2292 at 2609.104 kb on - strand, within Pf1N1B4_2292 at 2609.104 kb on - strand at 2609.104 kb on - strand, within Pf1N1B4_2292 at 2609.104 kb on - strand, within Pf1N1B4_2292 at 2609.104 kb on - strand, within Pf1N1B4_2292 at 2609.104 kb on - strand, within Pf1N1B4_2292 at 2609.104 kb on - strand, within Pf1N1B4_2292 at 2609.303 kb on + strand, within Pf1N1B4_2292 at 2609.303 kb on + strand, within Pf1N1B4_2292 at 2609.304 kb on - strand, within Pf1N1B4_2292 at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.357 kb on + strand at 2609.357 kb on + strand, within Pf1N1B4_2292 at 2609.358 kb on - strand, within Pf1N1B4_2292 at 2609.358 kb on - strand, within Pf1N1B4_2292 at 2609.358 kb on - strand, within Pf1N1B4_2292 at 2609.358 kb on - strand, within Pf1N1B4_2292 at 2609.358 kb on - strand, within Pf1N1B4_2292 at 2609.358 kb on - strand, within Pf1N1B4_2292 at 2609.358 kb on - strand, within Pf1N1B4_2292 at 2609.358 kb on - strand, within Pf1N1B4_2292 at 2609.358 kb on - strand, within Pf1N1B4_2292 at 2609.358 kb on - strand, within Pf1N1B4_2292 at 2609.583 kb on + strand at 2609.583 kb on + strand at 2609.584 kb on - strand at 2609.584 kb on - strand at 2609.584 kb on - strand at 2609.589 kb on + strand at 2609.665 kb on - strand at 2609.800 kb on + strand at 2609.800 kb on + strand at 2609.800 kb on + strand at 2609.801 kb on - strand at 2609.801 kb on - strand at 2609.854 kb on + strand at 2609.854 kb on + strand at 2609.854 kb on + strand at 2609.855 kb on - strand at 2610.025 kb on + strand, within Pf1N1B4_2293 at 2610.025 kb on + strand, within Pf1N1B4_2293 at 2610.025 kb on + strand, within Pf1N1B4_2293 at 2610.105 kb on + strand, within Pf1N1B4_2293 at 2610.105 kb on + strand, within Pf1N1B4_2293 at 2610.105 kb on + strand, within Pf1N1B4_2293 at 2610.106 kb on - strand, within Pf1N1B4_2293 at 2610.106 kb on - strand, within Pf1N1B4_2293 at 2610.174 kb on + strand, within Pf1N1B4_2293 at 2610.306 kb on + strand, within Pf1N1B4_2293 at 2610.307 kb on - strand, within Pf1N1B4_2293 at 2610.582 kb on + strand, within Pf1N1B4_2293 at 2610.582 kb on + strand, within Pf1N1B4_2293 at 2611.262 kb on + strand, within Pf1N1B4_2294 at 2611.262 kb on + strand, within Pf1N1B4_2294 at 2611.262 kb on + strand, within Pf1N1B4_2294 at 2611.262 kb on + strand, within Pf1N1B4_2294 at 2611.262 kb on + strand, within Pf1N1B4_2294 at 2611.263 kb on - strand, within Pf1N1B4_2294 at 2611.263 kb on - strand, within Pf1N1B4_2294 at 2611.288 kb on + strand, within Pf1N1B4_2294 at 2611.288 kb on + strand, within Pf1N1B4_2294 at 2611.288 kb on + strand, within Pf1N1B4_2294 at 2611.288 kb on + strand, within Pf1N1B4_2294 at 2611.289 kb on - strand, within Pf1N1B4_2294 at 2611.289 kb on - strand, within Pf1N1B4_2294 at 2611.289 kb on - strand, within Pf1N1B4_2294 at 2611.289 kb on - strand, within Pf1N1B4_2294 at 2611.289 kb on - strand, within Pf1N1B4_2294 at 2611.289 kb on - strand, within Pf1N1B4_2294 at 2611.289 kb on - strand, within Pf1N1B4_2294 at 2611.376 kb on + strand, within Pf1N1B4_2294 at 2611.377 kb on - strand, within Pf1N1B4_2294 at 2611.377 kb on - strand, within Pf1N1B4_2294 at 2611.423 kb on + strand, within Pf1N1B4_2294 at 2611.423 kb on + strand, within Pf1N1B4_2294 at 2611.428 kb on - strand, within Pf1N1B4_2294 at 2611.428 kb on - strand at 2611.463 kb on + strand, within Pf1N1B4_2294 at 2611.463 kb on + strand, within Pf1N1B4_2294 at 2611.463 kb on + strand, within Pf1N1B4_2294 at 2611.463 kb on + strand, within Pf1N1B4_2294 at 2611.463 kb on + strand, within Pf1N1B4_2294 at 2611.464 kb on - strand, within Pf1N1B4_2294 at 2611.464 kb on - strand, within Pf1N1B4_2294 at 2611.464 kb on - strand, within Pf1N1B4_2294 at 2611.464 kb on - strand, within Pf1N1B4_2294 at 2611.464 kb on - strand, within Pf1N1B4_2294 at 2611.464 kb on - strand, within Pf1N1B4_2294 at 2611.464 kb on - strand, within Pf1N1B4_2294 at 2611.703 kb on + strand, within Pf1N1B4_2294 at 2611.704 kb on - strand, within Pf1N1B4_2294 at 2611.704 kb on - strand, within Pf1N1B4_2294 at 2611.704 kb on - strand, within Pf1N1B4_2294 at 2611.883 kb on + strand, within Pf1N1B4_2294 at 2611.884 kb on - strand, within Pf1N1B4_2294 at 2611.884 kb on - strand, within Pf1N1B4_2294
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 2.5 mM remove 2,608,947 + Pf1N1B4_2292 0.17 -1.2 2,608,947 + Pf1N1B4_2292 0.17 +0.4 2,609,101 - +1.4 2,609,101 - Pf1N1B4_2292 0.34 +0.4 2,609,101 - Pf1N1B4_2292 0.34 +0.4 2,609,103 + Pf1N1B4_2292 0.35 -0.6 2,609,103 + Pf1N1B4_2292 0.35 +0.4 2,609,103 + Pf1N1B4_2292 0.35 +0.1 2,609,103 + Pf1N1B4_2292 0.35 +0.4 2,609,103 + Pf1N1B4_2292 0.35 +1.6 2,609,103 + Pf1N1B4_2292 0.35 -1.6 2,609,103 + Pf1N1B4_2292 0.35 +0.4 2,609,104 - Pf1N1B4_2292 0.35 -1.6 2,609,104 - Pf1N1B4_2292 0.35 -2.2 2,609,104 - -0.6 2,609,104 - Pf1N1B4_2292 0.35 -0.6 2,609,104 - Pf1N1B4_2292 0.35 +0.9 2,609,104 - Pf1N1B4_2292 0.35 +0.6 2,609,104 - Pf1N1B4_2292 0.35 +1.7 2,609,104 - Pf1N1B4_2292 0.35 +0.9 2,609,303 + Pf1N1B4_2292 0.58 +0.9 2,609,303 + Pf1N1B4_2292 0.58 +0.4 2,609,304 - Pf1N1B4_2292 0.58 +0.4 2,609,357 + Pf1N1B4_2292 0.64 +0.2 2,609,357 + Pf1N1B4_2292 0.64 -1.2 2,609,357 + Pf1N1B4_2292 0.64 -0.1 2,609,357 + Pf1N1B4_2292 0.64 -0.2 2,609,357 + Pf1N1B4_2292 0.64 +0.4 2,609,357 + Pf1N1B4_2292 0.64 +2.7 2,609,357 + Pf1N1B4_2292 0.64 +0.4 2,609,357 + Pf1N1B4_2292 0.64 +0.6 2,609,357 + Pf1N1B4_2292 0.64 -0.2 2,609,357 + Pf1N1B4_2292 0.64 +1.9 2,609,357 + Pf1N1B4_2292 0.64 -2.8 2,609,357 + Pf1N1B4_2292 0.64 +0.4 2,609,357 + Pf1N1B4_2292 0.64 -2.6 2,609,357 + Pf1N1B4_2292 0.64 +1.4 2,609,357 + Pf1N1B4_2292 0.64 +0.4 2,609,357 + +0.8 2,609,357 + Pf1N1B4_2292 0.64 -2.4 2,609,358 - Pf1N1B4_2292 0.64 -0.4 2,609,358 - Pf1N1B4_2292 0.64 -1.6 2,609,358 - Pf1N1B4_2292 0.64 +0.8 2,609,358 - Pf1N1B4_2292 0.64 -2.4 2,609,358 - Pf1N1B4_2292 0.64 -1.2 2,609,358 - Pf1N1B4_2292 0.64 -1.6 2,609,358 - Pf1N1B4_2292 0.64 +0.9 2,609,358 - Pf1N1B4_2292 0.64 -0.6 2,609,358 - Pf1N1B4_2292 0.64 +1.2 2,609,358 - Pf1N1B4_2292 0.64 +1.8 2,609,583 + +1.6 2,609,583 + +0.8 2,609,584 - +0.8 2,609,584 - +0.4 2,609,584 - +1.4 2,609,589 + -0.2 2,609,665 - -0.2 2,609,800 + -1.0 2,609,800 + +2.4 2,609,800 + +0.4 2,609,801 - +0.4 2,609,801 - -1.0 2,609,854 + +1.8 2,609,854 + -1.1 2,609,854 + -1.0 2,609,855 - -1.8 2,610,025 + Pf1N1B4_2293 0.13 -2.6 2,610,025 + Pf1N1B4_2293 0.13 +1.1 2,610,025 + Pf1N1B4_2293 0.13 +0.2 2,610,105 + Pf1N1B4_2293 0.20 +0.7 2,610,105 + Pf1N1B4_2293 0.20 +0.1 2,610,105 + Pf1N1B4_2293 0.20 -0.8 2,610,106 - Pf1N1B4_2293 0.20 -1.0 2,610,106 - Pf1N1B4_2293 0.20 -1.2 2,610,174 + Pf1N1B4_2293 0.26 -1.6 2,610,306 + Pf1N1B4_2293 0.39 +0.9 2,610,307 - Pf1N1B4_2293 0.39 -1.6 2,610,582 + Pf1N1B4_2293 0.64 -2.0 2,610,582 + Pf1N1B4_2293 0.64 +0.4 2,611,262 + Pf1N1B4_2294 0.17 +0.4 2,611,262 + Pf1N1B4_2294 0.17 -0.2 2,611,262 + Pf1N1B4_2294 0.17 -1.1 2,611,262 + Pf1N1B4_2294 0.17 -1.0 2,611,262 + Pf1N1B4_2294 0.17 +0.8 2,611,263 - Pf1N1B4_2294 0.17 -1.2 2,611,263 - Pf1N1B4_2294 0.17 +0.4 2,611,288 + Pf1N1B4_2294 0.19 -0.2 2,611,288 + Pf1N1B4_2294 0.19 +0.6 2,611,288 + Pf1N1B4_2294 0.19 -1.2 2,611,288 + Pf1N1B4_2294 0.19 -0.6 2,611,289 - Pf1N1B4_2294 0.19 -0.6 2,611,289 - Pf1N1B4_2294 0.19 +1.4 2,611,289 - Pf1N1B4_2294 0.19 -0.6 2,611,289 - Pf1N1B4_2294 0.19 -1.6 2,611,289 - Pf1N1B4_2294 0.19 -1.6 2,611,289 - Pf1N1B4_2294 0.19 +0.9 2,611,289 - Pf1N1B4_2294 0.19 -0.3 2,611,376 + Pf1N1B4_2294 0.24 +0.5 2,611,377 - Pf1N1B4_2294 0.24 -1.2 2,611,377 - Pf1N1B4_2294 0.24 +1.1 2,611,423 + Pf1N1B4_2294 0.27 +0.1 2,611,423 + Pf1N1B4_2294 0.27 -1.2 2,611,428 - Pf1N1B4_2294 0.27 +0.4 2,611,428 - +0.4 2,611,463 + Pf1N1B4_2294 0.29 -0.6 2,611,463 + Pf1N1B4_2294 0.29 +1.4 2,611,463 + Pf1N1B4_2294 0.29 -0.8 2,611,463 + Pf1N1B4_2294 0.29 -1.0 2,611,463 + Pf1N1B4_2294 0.29 +0.4 2,611,464 - Pf1N1B4_2294 0.29 +1.8 2,611,464 - Pf1N1B4_2294 0.29 +0.1 2,611,464 - Pf1N1B4_2294 0.29 -0.2 2,611,464 - Pf1N1B4_2294 0.29 +0.9 2,611,464 - Pf1N1B4_2294 0.29 -0.9 2,611,464 - Pf1N1B4_2294 0.29 -0.2 2,611,464 - Pf1N1B4_2294 0.29 -2.2 2,611,703 + Pf1N1B4_2294 0.43 +0.4 2,611,704 - Pf1N1B4_2294 0.43 +0.1 2,611,704 - Pf1N1B4_2294 0.43 +0.0 2,611,704 - Pf1N1B4_2294 0.43 -0.3 2,611,883 + Pf1N1B4_2294 0.53 -0.6 2,611,884 - Pf1N1B4_2294 0.53 -0.6 2,611,884 - Pf1N1B4_2294 0.53 +0.9
Or see this region's nucleotide sequence