Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1488

Experiment: Aluminum chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1487 and Pf1N1B4_1488 are separated by 122 nucleotidesPf1N1B4_1488 and Pf1N1B4_1489 are separated by 12 nucleotides Pf1N1B4_1487 - Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter, at 1,713,796 to 1,715,280 _1487 Pf1N1B4_1488 - hypothetical protein, at 1,715,403 to 1,715,729 _1488 Pf1N1B4_1489 - Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12), at 1,715,742 to 1,719,695 _1489 Position (kb) 1715 1716Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1714.714 kb on + strand, within Pf1N1B4_1487at 1714.715 kb on - strand, within Pf1N1B4_1487at 1714.760 kb on + strand, within Pf1N1B4_1487at 1714.803 kb on - strand, within Pf1N1B4_1487at 1714.862 kb on + strand, within Pf1N1B4_1487at 1714.862 kb on + strand, within Pf1N1B4_1487at 1714.862 kb on + strand, within Pf1N1B4_1487at 1714.943 kb on + strand, within Pf1N1B4_1487at 1715.021 kb on + strand, within Pf1N1B4_1487at 1715.022 kb on - strand, within Pf1N1B4_1487at 1715.022 kb on - strand, within Pf1N1B4_1487at 1715.075 kb on + strand, within Pf1N1B4_1487at 1715.075 kb on + strand, within Pf1N1B4_1487at 1715.075 kb on + strand, within Pf1N1B4_1487at 1715.075 kb on + strand, within Pf1N1B4_1487at 1715.075 kb on + strand, within Pf1N1B4_1487at 1715.075 kb on + strand, within Pf1N1B4_1487at 1715.075 kb on + strand, within Pf1N1B4_1487at 1715.075 kb on + strand, within Pf1N1B4_1487at 1715.076 kb on - strand, within Pf1N1B4_1487at 1715.076 kb on - strand, within Pf1N1B4_1487at 1715.076 kb on - strand, within Pf1N1B4_1487at 1715.076 kb on - strand, within Pf1N1B4_1487at 1715.076 kb on - strand, within Pf1N1B4_1487at 1715.076 kb on - strand, within Pf1N1B4_1487at 1715.076 kb on - strandat 1715.178 kb on - strandat 1715.241 kb on - strandat 1715.241 kb on - strandat 1715.241 kb on - strandat 1715.305 kb on + strandat 1715.305 kb on + strandat 1715.306 kb on - strandat 1715.306 kb on - strandat 1715.310 kb on - strandat 1715.310 kb on - strandat 1715.310 kb on - strandat 1715.375 kb on + strandat 1715.376 kb on - strandat 1715.376 kb on - strandat 1715.469 kb on + strand, within Pf1N1B4_1488at 1715.495 kb on - strand, within Pf1N1B4_1488at 1715.506 kb on - strand, within Pf1N1B4_1488at 1715.568 kb on + strand, within Pf1N1B4_1488at 1715.574 kb on + strand, within Pf1N1B4_1488at 1715.575 kb on - strand, within Pf1N1B4_1488at 1715.575 kb on - strand, within Pf1N1B4_1488at 1715.575 kb on - strand, within Pf1N1B4_1488at 1715.602 kb on + strand, within Pf1N1B4_1488at 1715.689 kb on - strand, within Pf1N1B4_1488at 1715.689 kb on - strand, within Pf1N1B4_1488at 1715.741 kb on + strandat 1715.742 kb on - strandat 1715.742 kb on - strandat 1715.742 kb on - strandat 1716.223 kb on + strand, within Pf1N1B4_1489at 1716.223 kb on + strand, within Pf1N1B4_1489at 1716.586 kb on - strand, within Pf1N1B4_1489at 1716.696 kb on + strand, within Pf1N1B4_1489at 1716.696 kb on + strand, within Pf1N1B4_1489at 1716.696 kb on + strand, within Pf1N1B4_1489at 1716.697 kb on - strand, within Pf1N1B4_1489at 1716.697 kb on - strand, within Pf1N1B4_1489

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 2.5 mM
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1,714,714 + Pf1N1B4_1487 0.62 -1.7
1,714,715 - Pf1N1B4_1487 0.62 -1.9
1,714,760 + Pf1N1B4_1487 0.65 -0.9
1,714,803 - Pf1N1B4_1487 0.68 +0.9
1,714,862 + Pf1N1B4_1487 0.72 -3.0
1,714,862 + Pf1N1B4_1487 0.72 +0.7
1,714,862 + Pf1N1B4_1487 0.72 -0.1
1,714,943 + Pf1N1B4_1487 0.77 -1.3
1,715,021 + Pf1N1B4_1487 0.82 -0.3
1,715,022 - Pf1N1B4_1487 0.83 +0.7
1,715,022 - Pf1N1B4_1487 0.83 +0.3
1,715,075 + Pf1N1B4_1487 0.86 +0.7
1,715,075 + Pf1N1B4_1487 0.86 +0.5
1,715,075 + Pf1N1B4_1487 0.86 -2.0
1,715,075 + Pf1N1B4_1487 0.86 -0.1
1,715,075 + Pf1N1B4_1487 0.86 +0.5
1,715,075 + Pf1N1B4_1487 0.86 +0.9
1,715,075 + Pf1N1B4_1487 0.86 +2.3
1,715,075 + Pf1N1B4_1487 0.86 +0.7
1,715,076 - Pf1N1B4_1487 0.86 +1.3
1,715,076 - Pf1N1B4_1487 0.86 -0.1
1,715,076 - Pf1N1B4_1487 0.86 +2.7
1,715,076 - Pf1N1B4_1487 0.86 -0.3
1,715,076 - Pf1N1B4_1487 0.86 -1.3
1,715,076 - Pf1N1B4_1487 0.86 +0.4
1,715,076 - -1.3
1,715,178 - +0.5
1,715,241 - +2.9
1,715,241 - +0.3
1,715,241 - +0.3
1,715,305 + +0.9
1,715,305 + -0.1
1,715,306 - +0.3
1,715,306 - +0.3
1,715,310 - +1.3
1,715,310 - -2.3
1,715,310 - +0.6
1,715,375 + -0.4
1,715,376 - +0.1
1,715,376 - +0.3
1,715,469 + Pf1N1B4_1488 0.20 +2.5
1,715,495 - Pf1N1B4_1488 0.28 +0.7
1,715,506 - Pf1N1B4_1488 0.31 +1.7
1,715,568 + Pf1N1B4_1488 0.50 -0.7
1,715,574 + Pf1N1B4_1488 0.52 -0.3
1,715,575 - Pf1N1B4_1488 0.53 +1.6
1,715,575 - Pf1N1B4_1488 0.53 +0.8
1,715,575 - Pf1N1B4_1488 0.53 -1.7
1,715,602 + Pf1N1B4_1488 0.61 +0.3
1,715,689 - Pf1N1B4_1488 0.87 +0.7
1,715,689 - Pf1N1B4_1488 0.87 -2.8
1,715,741 + +1.1
1,715,742 - -0.7
1,715,742 - -0.1
1,715,742 - +0.7
1,716,223 + Pf1N1B4_1489 0.12 -1.3
1,716,223 + Pf1N1B4_1489 0.12 +0.3
1,716,586 - Pf1N1B4_1489 0.21 -0.7
1,716,696 + Pf1N1B4_1489 0.24 +0.4
1,716,696 + Pf1N1B4_1489 0.24 -2.0
1,716,696 + Pf1N1B4_1489 0.24 +0.2
1,716,697 - Pf1N1B4_1489 0.24 +0.3
1,716,697 - Pf1N1B4_1489 0.24 -0.3

Or see this region's nucleotide sequence