Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1125

Experiment: Aluminum chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1124 and Pf1N1B4_1125 are separated by 10 nucleotidesPf1N1B4_1125 and Pf1N1B4_1126 are separated by 10 nucleotidesPf1N1B4_1126 and Pf1N1B4_1127 overlap by 1 nucleotides Pf1N1B4_1124 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 1,262,812 to 1,263,822 _1124 Pf1N1B4_1125 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 1,263,833 to 1,264,744 _1125 Pf1N1B4_1126 - Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2), at 1,264,755 to 1,265,723 _1126 Pf1N1B4_1127 - Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2), at 1,265,723 to 1,266,703 _1127 Position (kb) 1263 1264 1265Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1262.843 kb on + strandat 1262.921 kb on + strand, within Pf1N1B4_1124at 1262.921 kb on + strand, within Pf1N1B4_1124at 1262.921 kb on + strandat 1262.921 kb on + strand, within Pf1N1B4_1124at 1262.921 kb on + strand, within Pf1N1B4_1124at 1262.922 kb on - strand, within Pf1N1B4_1124at 1262.922 kb on - strand, within Pf1N1B4_1124at 1262.922 kb on - strand, within Pf1N1B4_1124at 1262.922 kb on - strand, within Pf1N1B4_1124at 1262.978 kb on + strand, within Pf1N1B4_1124at 1262.979 kb on - strand, within Pf1N1B4_1124at 1262.998 kb on + strand, within Pf1N1B4_1124at 1263.016 kb on + strand, within Pf1N1B4_1124at 1263.016 kb on + strand, within Pf1N1B4_1124at 1263.016 kb on + strand, within Pf1N1B4_1124at 1263.017 kb on - strand, within Pf1N1B4_1124at 1263.017 kb on - strand, within Pf1N1B4_1124at 1263.017 kb on - strand, within Pf1N1B4_1124at 1263.017 kb on - strand, within Pf1N1B4_1124at 1263.017 kb on - strand, within Pf1N1B4_1124at 1263.095 kb on + strandat 1263.096 kb on - strand, within Pf1N1B4_1124at 1263.096 kb on - strand, within Pf1N1B4_1124at 1263.135 kb on - strand, within Pf1N1B4_1124at 1263.328 kb on + strand, within Pf1N1B4_1124at 1263.328 kb on + strand, within Pf1N1B4_1124at 1263.367 kb on - strand, within Pf1N1B4_1124at 1263.508 kb on + strand, within Pf1N1B4_1124at 1263.509 kb on - strand, within Pf1N1B4_1124at 1263.509 kb on - strand, within Pf1N1B4_1124at 1263.509 kb on - strand, within Pf1N1B4_1124at 1263.785 kb on - strandat 1263.848 kb on - strandat 1263.848 kb on - strandat 1263.879 kb on - strandat 1263.891 kb on - strandat 1263.891 kb on - strandat 1263.893 kb on - strandat 1264.361 kb on + strand, within Pf1N1B4_1125at 1264.361 kb on + strand, within Pf1N1B4_1125at 1264.361 kb on + strand, within Pf1N1B4_1125at 1264.361 kb on + strand, within Pf1N1B4_1125at 1264.361 kb on + strand, within Pf1N1B4_1125at 1264.361 kb on + strand, within Pf1N1B4_1125at 1264.361 kb on + strand, within Pf1N1B4_1125at 1264.362 kb on - strand, within Pf1N1B4_1125at 1264.362 kb on - strand, within Pf1N1B4_1125at 1264.362 kb on - strand, within Pf1N1B4_1125at 1264.362 kb on - strand, within Pf1N1B4_1125at 1264.362 kb on - strand, within Pf1N1B4_1125at 1264.362 kb on - strand, within Pf1N1B4_1125at 1264.362 kb on - strand, within Pf1N1B4_1125at 1264.410 kb on - strand, within Pf1N1B4_1125at 1264.566 kb on + strand, within Pf1N1B4_1125at 1264.566 kb on + strand, within Pf1N1B4_1125at 1264.567 kb on - strand, within Pf1N1B4_1125at 1264.567 kb on - strand, within Pf1N1B4_1125at 1264.617 kb on - strand, within Pf1N1B4_1125at 1264.617 kb on - strand, within Pf1N1B4_1125at 1264.766 kb on - strandat 1264.766 kb on - strandat 1265.067 kb on + strand, within Pf1N1B4_1126at 1265.067 kb on + strand, within Pf1N1B4_1126at 1265.309 kb on - strand, within Pf1N1B4_1126at 1265.434 kb on - strand, within Pf1N1B4_1126at 1265.625 kb on + strand, within Pf1N1B4_1126at 1265.625 kb on + strand, within Pf1N1B4_1126at 1265.625 kb on + strand, within Pf1N1B4_1126at 1265.626 kb on - strand, within Pf1N1B4_1126at 1265.733 kb on + strandat 1265.733 kb on + strandat 1265.733 kb on + strandat 1265.734 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 2.5 mM
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1,262,843 + +0.8
1,262,921 + Pf1N1B4_1124 0.11 +1.8
1,262,921 + Pf1N1B4_1124 0.11 -1.4
1,262,921 + +1.2
1,262,921 + Pf1N1B4_1124 0.11 -1.4
1,262,921 + Pf1N1B4_1124 0.11 -0.9
1,262,922 - Pf1N1B4_1124 0.11 +1.4
1,262,922 - Pf1N1B4_1124 0.11 +0.2
1,262,922 - Pf1N1B4_1124 0.11 -0.1
1,262,922 - Pf1N1B4_1124 0.11 +0.4
1,262,978 + Pf1N1B4_1124 0.16 +0.5
1,262,979 - Pf1N1B4_1124 0.17 +1.8
1,262,998 + Pf1N1B4_1124 0.18 +1.3
1,263,016 + Pf1N1B4_1124 0.20 -1.1
1,263,016 + Pf1N1B4_1124 0.20 -0.8
1,263,016 + Pf1N1B4_1124 0.20 +0.2
1,263,017 - Pf1N1B4_1124 0.20 -1.8
1,263,017 - Pf1N1B4_1124 0.20 +0.8
1,263,017 - Pf1N1B4_1124 0.20 +0.7
1,263,017 - Pf1N1B4_1124 0.20 -1.0
1,263,017 - Pf1N1B4_1124 0.20 +0.5
1,263,095 + +2.2
1,263,096 - Pf1N1B4_1124 0.28 +0.2
1,263,096 - Pf1N1B4_1124 0.28 -1.1
1,263,135 - Pf1N1B4_1124 0.32 +0.9
1,263,328 + Pf1N1B4_1124 0.51 -1.2
1,263,328 + Pf1N1B4_1124 0.51 +0.2
1,263,367 - Pf1N1B4_1124 0.55 -0.4
1,263,508 + Pf1N1B4_1124 0.69 -0.8
1,263,509 - Pf1N1B4_1124 0.69 -0.8
1,263,509 - Pf1N1B4_1124 0.69 -1.6
1,263,509 - Pf1N1B4_1124 0.69 +2.2
1,263,785 - -0.8
1,263,848 - -0.3
1,263,848 - -0.1
1,263,879 - +2.8
1,263,891 - +0.2
1,263,891 - -1.4
1,263,893 - -0.2
1,264,361 + Pf1N1B4_1125 0.58 -1.4
1,264,361 + Pf1N1B4_1125 0.58 +0.3
1,264,361 + Pf1N1B4_1125 0.58 -2.1
1,264,361 + Pf1N1B4_1125 0.58 -1.4
1,264,361 + Pf1N1B4_1125 0.58 -0.4
1,264,361 + Pf1N1B4_1125 0.58 -1.8
1,264,361 + Pf1N1B4_1125 0.58 -0.8
1,264,362 - Pf1N1B4_1125 0.58 +0.4
1,264,362 - Pf1N1B4_1125 0.58 -2.4
1,264,362 - Pf1N1B4_1125 0.58 +0.8
1,264,362 - Pf1N1B4_1125 0.58 +0.5
1,264,362 - Pf1N1B4_1125 0.58 -2.1
1,264,362 - Pf1N1B4_1125 0.58 +0.2
1,264,362 - Pf1N1B4_1125 0.58 -0.4
1,264,410 - Pf1N1B4_1125 0.63 +1.2
1,264,566 + Pf1N1B4_1125 0.80 -1.0
1,264,566 + Pf1N1B4_1125 0.80 -1.4
1,264,567 - Pf1N1B4_1125 0.80 -1.4
1,264,567 - Pf1N1B4_1125 0.80 -2.4
1,264,617 - Pf1N1B4_1125 0.86 +0.2
1,264,617 - Pf1N1B4_1125 0.86 -2.4
1,264,766 - +0.9
1,264,766 - +0.9
1,265,067 + Pf1N1B4_1126 0.32 -0.8
1,265,067 + Pf1N1B4_1126 0.32 -2.4
1,265,309 - Pf1N1B4_1126 0.57 -0.2
1,265,434 - Pf1N1B4_1126 0.70 +1.5
1,265,625 + Pf1N1B4_1126 0.90 -0.2
1,265,625 + Pf1N1B4_1126 0.90 -0.6
1,265,625 + Pf1N1B4_1126 0.90 -0.4
1,265,626 - Pf1N1B4_1126 0.90 -1.0
1,265,733 + -2.6
1,265,733 + -0.2
1,265,733 + -1.4
1,265,734 - +2.2

Or see this region's nucleotide sequence