Experiment: Aluminum chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1124 and Pf1N1B4_1125 are separated by 10 nucleotides Pf1N1B4_1125 and Pf1N1B4_1126 are separated by 10 nucleotides Pf1N1B4_1126 and Pf1N1B4_1127 overlap by 1 nucleotides
Pf1N1B4_1124 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 1,262,812 to 1,263,822
_1124
Pf1N1B4_1125 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 1,263,833 to 1,264,744
_1125
Pf1N1B4_1126 - Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2), at 1,264,755 to 1,265,723
_1126
Pf1N1B4_1127 - Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2), at 1,265,723 to 1,266,703
_1127
Position (kb)
1263
1264
1265 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1262.843 kb on + strand at 1262.921 kb on + strand, within Pf1N1B4_1124 at 1262.921 kb on + strand, within Pf1N1B4_1124 at 1262.921 kb on + strand at 1262.921 kb on + strand, within Pf1N1B4_1124 at 1262.921 kb on + strand, within Pf1N1B4_1124 at 1262.922 kb on - strand, within Pf1N1B4_1124 at 1262.922 kb on - strand, within Pf1N1B4_1124 at 1262.922 kb on - strand, within Pf1N1B4_1124 at 1262.922 kb on - strand, within Pf1N1B4_1124 at 1262.978 kb on + strand, within Pf1N1B4_1124 at 1262.979 kb on - strand, within Pf1N1B4_1124 at 1262.998 kb on + strand, within Pf1N1B4_1124 at 1263.016 kb on + strand, within Pf1N1B4_1124 at 1263.016 kb on + strand, within Pf1N1B4_1124 at 1263.016 kb on + strand, within Pf1N1B4_1124 at 1263.017 kb on - strand, within Pf1N1B4_1124 at 1263.017 kb on - strand, within Pf1N1B4_1124 at 1263.017 kb on - strand, within Pf1N1B4_1124 at 1263.017 kb on - strand, within Pf1N1B4_1124 at 1263.017 kb on - strand, within Pf1N1B4_1124 at 1263.095 kb on + strand at 1263.096 kb on - strand, within Pf1N1B4_1124 at 1263.096 kb on - strand, within Pf1N1B4_1124 at 1263.135 kb on - strand, within Pf1N1B4_1124 at 1263.328 kb on + strand, within Pf1N1B4_1124 at 1263.328 kb on + strand, within Pf1N1B4_1124 at 1263.367 kb on - strand, within Pf1N1B4_1124 at 1263.508 kb on + strand, within Pf1N1B4_1124 at 1263.509 kb on - strand, within Pf1N1B4_1124 at 1263.509 kb on - strand, within Pf1N1B4_1124 at 1263.509 kb on - strand, within Pf1N1B4_1124 at 1263.785 kb on - strand at 1263.848 kb on - strand at 1263.848 kb on - strand at 1263.879 kb on - strand at 1263.891 kb on - strand at 1263.891 kb on - strand at 1263.893 kb on - strand at 1264.361 kb on + strand, within Pf1N1B4_1125 at 1264.361 kb on + strand, within Pf1N1B4_1125 at 1264.361 kb on + strand, within Pf1N1B4_1125 at 1264.361 kb on + strand, within Pf1N1B4_1125 at 1264.361 kb on + strand, within Pf1N1B4_1125 at 1264.361 kb on + strand, within Pf1N1B4_1125 at 1264.361 kb on + strand, within Pf1N1B4_1125 at 1264.362 kb on - strand, within Pf1N1B4_1125 at 1264.362 kb on - strand, within Pf1N1B4_1125 at 1264.362 kb on - strand, within Pf1N1B4_1125 at 1264.362 kb on - strand, within Pf1N1B4_1125 at 1264.362 kb on - strand, within Pf1N1B4_1125 at 1264.362 kb on - strand, within Pf1N1B4_1125 at 1264.362 kb on - strand, within Pf1N1B4_1125 at 1264.410 kb on - strand, within Pf1N1B4_1125 at 1264.566 kb on + strand, within Pf1N1B4_1125 at 1264.566 kb on + strand, within Pf1N1B4_1125 at 1264.567 kb on - strand, within Pf1N1B4_1125 at 1264.567 kb on - strand, within Pf1N1B4_1125 at 1264.617 kb on - strand, within Pf1N1B4_1125 at 1264.617 kb on - strand, within Pf1N1B4_1125 at 1264.766 kb on - strand at 1264.766 kb on - strand at 1265.067 kb on + strand, within Pf1N1B4_1126 at 1265.067 kb on + strand, within Pf1N1B4_1126 at 1265.309 kb on - strand, within Pf1N1B4_1126 at 1265.434 kb on - strand, within Pf1N1B4_1126 at 1265.625 kb on + strand, within Pf1N1B4_1126 at 1265.625 kb on + strand, within Pf1N1B4_1126 at 1265.625 kb on + strand, within Pf1N1B4_1126 at 1265.626 kb on - strand, within Pf1N1B4_1126 at 1265.733 kb on + strand at 1265.733 kb on + strand at 1265.733 kb on + strand at 1265.734 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 2.5 mM remove 1,262,843 + +0.8 1,262,921 + Pf1N1B4_1124 0.11 +1.8 1,262,921 + Pf1N1B4_1124 0.11 -1.4 1,262,921 + +1.2 1,262,921 + Pf1N1B4_1124 0.11 -1.4 1,262,921 + Pf1N1B4_1124 0.11 -0.9 1,262,922 - Pf1N1B4_1124 0.11 +1.4 1,262,922 - Pf1N1B4_1124 0.11 +0.2 1,262,922 - Pf1N1B4_1124 0.11 -0.1 1,262,922 - Pf1N1B4_1124 0.11 +0.4 1,262,978 + Pf1N1B4_1124 0.16 +0.5 1,262,979 - Pf1N1B4_1124 0.17 +1.8 1,262,998 + Pf1N1B4_1124 0.18 +1.3 1,263,016 + Pf1N1B4_1124 0.20 -1.1 1,263,016 + Pf1N1B4_1124 0.20 -0.8 1,263,016 + Pf1N1B4_1124 0.20 +0.2 1,263,017 - Pf1N1B4_1124 0.20 -1.8 1,263,017 - Pf1N1B4_1124 0.20 +0.8 1,263,017 - Pf1N1B4_1124 0.20 +0.7 1,263,017 - Pf1N1B4_1124 0.20 -1.0 1,263,017 - Pf1N1B4_1124 0.20 +0.5 1,263,095 + +2.2 1,263,096 - Pf1N1B4_1124 0.28 +0.2 1,263,096 - Pf1N1B4_1124 0.28 -1.1 1,263,135 - Pf1N1B4_1124 0.32 +0.9 1,263,328 + Pf1N1B4_1124 0.51 -1.2 1,263,328 + Pf1N1B4_1124 0.51 +0.2 1,263,367 - Pf1N1B4_1124 0.55 -0.4 1,263,508 + Pf1N1B4_1124 0.69 -0.8 1,263,509 - Pf1N1B4_1124 0.69 -0.8 1,263,509 - Pf1N1B4_1124 0.69 -1.6 1,263,509 - Pf1N1B4_1124 0.69 +2.2 1,263,785 - -0.8 1,263,848 - -0.3 1,263,848 - -0.1 1,263,879 - +2.8 1,263,891 - +0.2 1,263,891 - -1.4 1,263,893 - -0.2 1,264,361 + Pf1N1B4_1125 0.58 -1.4 1,264,361 + Pf1N1B4_1125 0.58 +0.3 1,264,361 + Pf1N1B4_1125 0.58 -2.1 1,264,361 + Pf1N1B4_1125 0.58 -1.4 1,264,361 + Pf1N1B4_1125 0.58 -0.4 1,264,361 + Pf1N1B4_1125 0.58 -1.8 1,264,361 + Pf1N1B4_1125 0.58 -0.8 1,264,362 - Pf1N1B4_1125 0.58 +0.4 1,264,362 - Pf1N1B4_1125 0.58 -2.4 1,264,362 - Pf1N1B4_1125 0.58 +0.8 1,264,362 - Pf1N1B4_1125 0.58 +0.5 1,264,362 - Pf1N1B4_1125 0.58 -2.1 1,264,362 - Pf1N1B4_1125 0.58 +0.2 1,264,362 - Pf1N1B4_1125 0.58 -0.4 1,264,410 - Pf1N1B4_1125 0.63 +1.2 1,264,566 + Pf1N1B4_1125 0.80 -1.0 1,264,566 + Pf1N1B4_1125 0.80 -1.4 1,264,567 - Pf1N1B4_1125 0.80 -1.4 1,264,567 - Pf1N1B4_1125 0.80 -2.4 1,264,617 - Pf1N1B4_1125 0.86 +0.2 1,264,617 - Pf1N1B4_1125 0.86 -2.4 1,264,766 - +0.9 1,264,766 - +0.9 1,265,067 + Pf1N1B4_1126 0.32 -0.8 1,265,067 + Pf1N1B4_1126 0.32 -2.4 1,265,309 - Pf1N1B4_1126 0.57 -0.2 1,265,434 - Pf1N1B4_1126 0.70 +1.5 1,265,625 + Pf1N1B4_1126 0.90 -0.2 1,265,625 + Pf1N1B4_1126 0.90 -0.6 1,265,625 + Pf1N1B4_1126 0.90 -0.4 1,265,626 - Pf1N1B4_1126 0.90 -1.0 1,265,733 + -2.6 1,265,733 + -0.2 1,265,733 + -1.4 1,265,734 - +2.2
Or see this region's nucleotide sequence