Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13000

Experiment: R2A with Calcium chloride 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Calcium chloride 250 mM
2,901,254	+				-1.0
2,901,255	-				-0.6
2,901,255	-				+0.7
2,901,255	-				+0.4
2,901,300	+				-1.8
2,901,300	+				+0.4
2,901,300	+				-0.4
2,901,301	-				-0.9
2,901,301	-				+0.8
2,901,403	-		LRK54_RS12990	0.26	+1.0
2,901,430	-		LRK54_RS12990	0.32	+0.3
2,901,430	-		LRK54_RS12990	0.32	-1.8
2,901,443	+		LRK54_RS12990	0.36	-0.4
2,901,443	+		LRK54_RS12990	0.36	-1.6
2,901,443	+		LRK54_RS12990	0.36	+0.4
2,901,443	+		LRK54_RS12990	0.36	+2.4
2,901,443	+		LRK54_RS12990	0.36	+3.6
2,901,444	-		LRK54_RS12990	0.36	-1.9
2,901,444	-		LRK54_RS12990	0.36	-1.3
2,901,549	+		LRK54_RS12990	0.62	+0.9
2,901,549	+		LRK54_RS12990	0.62	-2.0
2,901,549	+		LRK54_RS12990	0.62	+0.6
2,901,549	+		LRK54_RS12990	0.62	+3.1
2,901,550	-		LRK54_RS12990	0.62	-1.1
2,901,550	-		LRK54_RS12990	0.62	+1.0
2,901,550	-		LRK54_RS12990	0.62	-2.1
2,901,585	+		LRK54_RS12990	0.71	-0.4
2,901,585	+		LRK54_RS12990	0.71	-1.4
2,901,585	+		LRK54_RS12990	0.71	-0.8
2,901,585	+		LRK54_RS12990	0.71	-0.4
2,901,585	+		LRK54_RS12990	0.71	+0.3
2,901,585	+		LRK54_RS12990	0.71	-0.0
2,901,585	+		LRK54_RS12990	0.71	-0.5
2,901,585	+		LRK54_RS12990	0.71	+0.7
2,901,585	+		LRK54_RS12990	0.71	+0.1
2,901,585	+		LRK54_RS12990	0.71	+2.6
2,901,585	+		LRK54_RS12990	0.71	-1.1
2,901,585	+		LRK54_RS12990	0.71	-1.7
2,901,585	+		LRK54_RS12990	0.71	-1.4
2,901,585	+		LRK54_RS12990	0.71	+0.2
2,901,585	+		LRK54_RS12990	0.71	-0.5
2,901,585	+		LRK54_RS12990	0.71	+0.2
2,901,585	+		LRK54_RS12990	0.71	-0.4
2,901,585	+		LRK54_RS12990	0.71	-1.6
2,901,585	+		LRK54_RS12990	0.71	+0.6
2,901,585	+		LRK54_RS12990	0.71	-0.5
2,901,585	+		LRK54_RS12990	0.71	-1.4
2,901,585	+		LRK54_RS12990	0.71	+0.1
2,901,585	+		LRK54_RS12990	0.71	-0.2
2,901,585	+		LRK54_RS12990	0.71	+1.6
2,901,585	+		LRK54_RS12990	0.71	-3.3
2,901,585	+		LRK54_RS12990	0.71	+2.4
2,901,585	+		LRK54_RS12990	0.71	-0.4
2,901,585	+		LRK54_RS12990	0.71	-0.2
2,901,586	-		LRK54_RS12990	0.71	+0.2
2,901,586	-		LRK54_RS12990	0.71	+0.1
2,901,586	-		LRK54_RS12990	0.71	-0.0
2,901,586	-		LRK54_RS12990	0.71	+0.6
2,901,586	-		LRK54_RS12990	0.71	-0.5
2,901,586	-		LRK54_RS12990	0.71	-0.2
2,901,586	-		LRK54_RS12990	0.71	+1.7
2,901,586	-		LRK54_RS12990	0.71	+0.2
2,901,586	-		LRK54_RS12990	0.71	-1.2
2,901,586	-		LRK54_RS12990	0.71	-0.1
2,901,586	-		LRK54_RS12990	0.71	+0.5
2,901,586	-		LRK54_RS12990	0.71	-0.0
2,901,586	-		LRK54_RS12990	0.71	-2.0
2,901,586	-		LRK54_RS12990	0.71	-0.3
2,901,586	-		LRK54_RS12990	0.71	-0.5
2,901,586	-		LRK54_RS12990	0.71	-1.0
2,901,586	-		LRK54_RS12990	0.71	+2.6
2,901,586	-		LRK54_RS12990	0.71	-1.4
2,901,586	-		LRK54_RS12990	0.71	-0.0
2,901,586	-		LRK54_RS12990	0.71	+1.1
2,901,586	-		LRK54_RS12990	0.71	-1.2
2,901,586	-		LRK54_RS12990	0.71	+0.6
2,901,586	-		LRK54_RS12990	0.71	-0.8
2,901,586	-		LRK54_RS12990	0.71	-0.8
2,901,586	-		LRK54_RS12990	0.71	+0.3
2,901,586	-		LRK54_RS12990	0.71	+0.2
2,901,586	-		LRK54_RS12990	0.71	-0.4
2,901,586	-		LRK54_RS12990	0.71	-0.4
2,901,586	-		LRK54_RS12990	0.71	-0.1
2,901,586	-		LRK54_RS12990	0.71	-2.2
2,901,586	-		LRK54_RS12990	0.71	+0.9
2,901,636	+		LRK54_RS12990	0.83	-1.0
2,901,636	+		LRK54_RS12990	0.83	-1.4
2,901,636	+		LRK54_RS12990	0.83	-0.0
2,901,636	+		LRK54_RS12990	0.83	+1.0
2,901,636	+		LRK54_RS12990	0.83	+0.6
2,901,636	+		LRK54_RS12990	0.83	+0.8
2,901,636	+		LRK54_RS12990	0.83	+0.6
2,901,636	+		LRK54_RS12990	0.83	+0.3
2,901,636	+		LRK54_RS12990	0.83	-0.6
2,901,637	-		LRK54_RS12990	0.83	-0.4
2,901,637	-		LRK54_RS12990	0.83	+1.4
2,901,637	-		LRK54_RS12990	0.83	-0.7
2,901,637	-		LRK54_RS12990	0.83	-0.1
2,901,637	-		LRK54_RS12990	0.83	-1.9
2,901,637	-		LRK54_RS12990	0.83	+1.2
2,901,637	-		LRK54_RS12990	0.83	+0.0
2,901,637	-		LRK54_RS12990	0.83	+0.6
2,901,637	-		LRK54_RS12990	0.83	-0.0
2,901,637	-		LRK54_RS12990	0.83	+0.9
2,901,637	-		LRK54_RS12990	0.83	-0.4
2,901,637	-		LRK54_RS12990	0.83	+0.4
2,901,637	-		LRK54_RS12990	0.83	+0.6
2,901,637	-		LRK54_RS12990	0.83	+1.3
2,901,637	-		LRK54_RS12990	0.83	+0.5
2,901,637	-		LRK54_RS12990	0.83	+0.1
2,901,637	-		LRK54_RS12990	0.83	-0.4
2,901,735	+				-0.5
2,901,735	+				-0.4
2,901,735	+				-0.4
2,901,735	+				+1.3
2,901,735	+				-1.5
2,901,735	+				-1.2
2,901,735	+				-1.0
2,901,735	+				-0.9
2,901,735	+				-0.6
2,901,735	+				-0.3
2,901,736	-				+1.3
2,901,736	-				+1.5
2,901,736	-				-1.0
2,901,736	-				-0.8
2,901,736	-				+0.8
2,901,736	-				+0.2
2,901,736	-				+0.6
2,901,736	-				+0.1
2,901,736	-				-1.4
2,901,736	-				-1.6
2,901,736	-				-1.6
2,901,736	-				+1.6
2,901,736	-				-2.1
2,901,736	-				-0.7
2,901,736	-				-1.2
2,901,736	-				-0.2
2,901,736	-				-0.9
2,901,736	-				-2.1
2,901,736	-				+0.4
2,901,736	-				+0.1
2,901,793	+				-0.8
2,901,793	+				-0.4
2,901,794	-				+0.1
2,901,794	-				-0.4
2,901,797	+				-0.3
2,901,797	+				-0.0
2,901,797	+				-0.2
2,901,797	+				+1.3
2,901,797	+				-0.0
2,901,797	+				-1.4
2,901,797	+				-1.8
2,901,798	-				+0.1
2,901,798	-				-0.5
2,901,798	-				-2.5
2,901,798	-				+0.9
2,901,798	-				-1.2
2,901,798	-				-0.5
2,901,798	-				-0.3
2,901,839	+		LRK54_RS12995	0.19	+0.1
2,901,839	+		LRK54_RS12995	0.19	+1.6
2,901,840	-		LRK54_RS12995	0.20	+0.0
2,901,936	-		LRK54_RS12995	0.48	-0.4
2,902,176	+				+0.8
2,902,176	+				-0.4
2,902,176	+				+1.0
2,902,177	-				+0.1
2,902,177	-				-0.9
2,902,333	+				+0.6
2,902,333	+				-0.2
2,902,333	+				+0.2
2,902,333	+				+0.3
2,902,334	-				-0.2
2,902,334	-				-0.2
2,902,334	-				+0.4
2,902,334	-				-0.2
2,902,444	+		LRK54_RS13000	0.14	-0.0
2,902,444	+		LRK54_RS13000	0.14	+2.6
2,902,444	+		LRK54_RS13000	0.14	-0.1
2,902,444	+		LRK54_RS13000	0.14	-0.8
2,902,444	+		LRK54_RS13000	0.14	-2.0
2,902,444	+		LRK54_RS13000	0.14	-0.4
2,902,444	+		LRK54_RS13000	0.14	-0.6
2,902,444	+		LRK54_RS13000	0.14	-1.0
2,902,444	+		LRK54_RS13000	0.14	+2.1
2,902,444	+		LRK54_RS13000	0.14	-0.4
2,902,444	+		LRK54_RS13000	0.14	-0.0
2,902,444	+		LRK54_RS13000	0.14	+0.2
2,902,444	+		LRK54_RS13000	0.14	-0.0
2,902,444	+		LRK54_RS13000	0.14	-1.2
2,902,445	-		LRK54_RS13000	0.14	+0.4
2,902,445	-		LRK54_RS13000	0.14	-0.7
2,902,445	-		LRK54_RS13000	0.14	+2.9
2,902,445	-		LRK54_RS13000	0.14	-0.9
2,902,445	-		LRK54_RS13000	0.14	+0.9
2,902,445	-		LRK54_RS13000	0.14	-2.8
2,902,445	-		LRK54_RS13000	0.14	-0.1
2,902,445	-		LRK54_RS13000	0.14	+0.4
2,902,445	-		LRK54_RS13000	0.14	+0.2
2,902,445	-		LRK54_RS13000	0.14	-1.9
2,902,445	-		LRK54_RS13000	0.14	-0.4
2,902,522	+		LRK54_RS13000	0.18	+0.4
2,902,522	+		LRK54_RS13000	0.18	+1.0
2,902,522	+		LRK54_RS13000	0.18	-1.8
2,902,522	+		LRK54_RS13000	0.18	-0.1
2,902,522	+		LRK54_RS13000	0.18	+0.4
2,902,522	+		LRK54_RS13000	0.18	-0.4
2,902,522	+		LRK54_RS13000	0.18	-1.0
2,902,522	+		LRK54_RS13000	0.18	-1.0
2,902,522	+		LRK54_RS13000	0.18	-0.2
2,902,523	-		LRK54_RS13000	0.18	-0.4
2,902,523	-		LRK54_RS13000	0.18	-0.5
2,902,523	-		LRK54_RS13000	0.18	+0.2
2,902,523	-		LRK54_RS13000	0.18	+2.0
2,902,523	-		LRK54_RS13000	0.18	+1.7
2,902,523	-		LRK54_RS13000	0.18	+0.8
2,902,523	-		LRK54_RS13000	0.18	-0.0
2,902,523	-		LRK54_RS13000	0.18	+0.3
2,902,523	-		LRK54_RS13000	0.18	+0.6
2,902,523	-		LRK54_RS13000	0.18	-0.4
2,902,523	-		LRK54_RS13000	0.18	-1.0
2,902,523	-		LRK54_RS13000	0.18	-0.4
2,902,523	-		LRK54_RS13000	0.18	+0.7
2,902,616	+		LRK54_RS13000	0.23	-0.0
2,902,616	+		LRK54_RS13000	0.23	+0.2
2,902,617	-		LRK54_RS13000	0.23	-2.8
2,902,648	+		LRK54_RS13000	0.25	-0.8
2,902,649	-		LRK54_RS13000	0.25	+1.3
2,902,888	+		LRK54_RS13000	0.38	-0.2
2,902,888	+		LRK54_RS13000	0.38	+0.2
2,902,888	+		LRK54_RS13000	0.38	-0.9
2,902,888	+		LRK54_RS13000	0.38	-0.3
2,902,888	+		LRK54_RS13000	0.38	+0.4
2,902,888	+		LRK54_RS13000	0.38	-2.7
2,902,888	+		LRK54_RS13000	0.38	+2.6
2,902,889	-		LRK54_RS13000	0.38	-0.4
2,902,889	-		LRK54_RS13000	0.38	-1.0
2,902,889	-		LRK54_RS13000	0.38	+1.6
2,902,889	-		LRK54_RS13000	0.38	-2.3
2,902,889	-		LRK54_RS13000	0.38	-1.0
2,902,889	-		LRK54_RS13000	0.38	-0.0
2,902,889	-		LRK54_RS13000	0.38	-1.1
2,902,960	+		LRK54_RS13000	0.42	-0.5
2,902,960	+		LRK54_RS13000	0.42	-0.8
2,902,961	-		LRK54_RS13000	0.42	+0.5
2,903,122	+		LRK54_RS13000	0.51	-0.0
2,903,122	+		LRK54_RS13000	0.51	-0.0
2,903,122	+		LRK54_RS13000	0.51	-2.2
2,903,122	+		LRK54_RS13000	0.51	-1.0
2,903,122	+		LRK54_RS13000	0.51	+1.0
2,903,122	+		LRK54_RS13000	0.51	-1.2
2,903,122	+		LRK54_RS13000	0.51	-0.6
2,903,123	-		LRK54_RS13000	0.51	+2.6
2,903,123	-		LRK54_RS13000	0.51	-1.1
2,903,123	-		LRK54_RS13000	0.51	+1.1
2,903,123	-		LRK54_RS13000	0.51	-0.2
2,903,123	-		LRK54_RS13000	0.51	-0.9
2,903,123	-		LRK54_RS13000	0.51	-0.1
2,903,123	-		LRK54_RS13000	0.51	-0.4
2,903,125	+		LRK54_RS13000	0.51	+0.2
2,903,125	+		LRK54_RS13000	0.51	-2.2
2,903,125	+		LRK54_RS13000	0.51	-0.4
2,903,125	+		LRK54_RS13000	0.51	-1.0
2,903,125	+		LRK54_RS13000	0.51	+0.2
2,903,125	+		LRK54_RS13000	0.51	+0.6
2,903,126	-		LRK54_RS13000	0.51	+1.6
2,903,126	-		LRK54_RS13000	0.51	-0.0
2,903,126	-		LRK54_RS13000	0.51	+1.0
2,903,126	-		LRK54_RS13000	0.51	-2.4
2,903,126	-		LRK54_RS13000	0.51	-1.0
2,903,126	-		LRK54_RS13000	0.51	-0.4
2,903,126	-		LRK54_RS13000	0.51	+0.5
2,903,126	-		LRK54_RS13000	0.51	-3.0
2,903,126	-		LRK54_RS13000	0.51	-0.4
2,903,182	+		LRK54_RS13000	0.54	-0.8
2,903,182	+		LRK54_RS13000	0.54	-0.4
2,903,182	+		LRK54_RS13000	0.54	+0.9
2,903,182	+		LRK54_RS13000	0.54	-0.0
2,903,182	+		LRK54_RS13000	0.54	-0.0
2,903,182	+		LRK54_RS13000	0.54	-1.0
2,903,182	+		LRK54_RS13000	0.54	-1.1
2,903,182	+		LRK54_RS13000	0.54	+0.6
2,903,182	+		LRK54_RS13000	0.54	-1.0
2,903,182	+		LRK54_RS13000	0.54	-1.8
2,903,182	+		LRK54_RS13000	0.54	+1.3
2,903,183	-		LRK54_RS13000	0.54	-0.5
2,903,183	-		LRK54_RS13000	0.54	+0.6
2,903,183	-		LRK54_RS13000	0.54	-0.7
2,903,183	-		LRK54_RS13000	0.54	-1.2
2,903,183	-		LRK54_RS13000	0.54	+0.6
2,903,183	-		LRK54_RS13000	0.54	-1.3
2,903,183	-		LRK54_RS13000	0.54	+0.4
2,903,183	-		LRK54_RS13000	0.54	+0.9
2,903,183	-		LRK54_RS13000	0.54	+0.7
2,903,183	-		LRK54_RS13000	0.54	+0.6
2,903,287	+		LRK54_RS13000	0.60	-0.0
2,903,287	+		LRK54_RS13000	0.60	+0.2
2,903,287	+		LRK54_RS13000	0.60	-0.8
2,903,344	+		LRK54_RS13000	0.63	-0.0
2,903,344	+		LRK54_RS13000	0.63	-0.7
2,903,344	+		LRK54_RS13000	0.63	-0.0
2,903,344	+		LRK54_RS13000	0.63	-2.3
2,903,344	+		LRK54_RS13000	0.63	-0.9
2,903,344	+		LRK54_RS13000	0.63	-0.6
2,903,345	-		LRK54_RS13000	0.63	+1.0
2,903,403	+		LRK54_RS13000	0.66	+0.6
2,903,403	+		LRK54_RS13000	0.66	-0.0
2,903,404	-		LRK54_RS13000	0.66	-1.1
2,903,437	+		LRK54_RS13000	0.68	+0.6
2,903,437	+		LRK54_RS13000	0.68	+1.2
2,903,437	+		LRK54_RS13000	0.68	+0.4
2,903,437	+		LRK54_RS13000	0.68	-1.1
2,903,437	+		LRK54_RS13000	0.68	-1.6
2,903,438	-		LRK54_RS13000	0.68	-1.5
2,903,438	-		LRK54_RS13000	0.68	+0.6
2,903,438	-		LRK54_RS13000	0.68	-0.2
2,903,438	-		LRK54_RS13000	0.68	-0.2
2,903,438	-		LRK54_RS13000	0.68	+0.3
2,903,594	+		LRK54_RS13000	0.77	-1.4
2,903,594	+		LRK54_RS13000	0.77	+1.0
2,903,595	-		LRK54_RS13000	0.77	-1.2
2,903,595	-		LRK54_RS13000	0.77	+0.2
2,903,595	-		LRK54_RS13000	0.77	-0.3
2,903,595	-		LRK54_RS13000	0.77	-1.2
2,903,595	-		LRK54_RS13000	0.77	-1.5
2,903,595	-		LRK54_RS13000	0.77	-0.7
2,903,595	-		LRK54_RS13000	0.77	-1.0
2,903,633	-		LRK54_RS13000	0.79	-1.2
2,903,797	+		LRK54_RS13000	0.88	+1.0
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2,903,798	-		LRK54_RS13000	0.88	-1.1
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2,903,869	+				+2.0
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