Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06750

Experiment: R2A with Calcium chloride 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Calcium chloride 250 mM
1,449,822	+		LRK54_RS06745	0.29	+2.0
1,449,822	+		LRK54_RS06745	0.29	+0.6
1,449,822	+		LRK54_RS06745	0.29	-2.0
1,449,822	+		LRK54_RS06745	0.29	+2.9
1,449,822	+		LRK54_RS06745	0.29	+1.6
1,449,822	+		LRK54_RS06745	0.29	-1.1
1,449,822	+		LRK54_RS06745	0.29	-2.0
1,449,822	+		LRK54_RS06745	0.29	+4.0
1,449,822	+		LRK54_RS06745	0.29	-0.1
1,449,822	+		LRK54_RS06745	0.29	+2.0
1,449,822	+		LRK54_RS06745	0.29	+1.1
1,449,822	+		LRK54_RS06745	0.29	+1.2
1,449,822	+		LRK54_RS06745	0.29	-0.0
1,449,822	+		LRK54_RS06745	0.29	-1.1
1,449,822	+		LRK54_RS06745	0.29	+3.0
1,449,822	+		LRK54_RS06745	0.29	+3.5
1,449,822	+		LRK54_RS06745	0.29	+0.5
1,449,822	+		LRK54_RS06745	0.29	+0.4
1,449,822	+		LRK54_RS06745	0.29	+2.5
1,449,822	+		LRK54_RS06745	0.29	+1.3
1,449,822	+		LRK54_RS06745	0.29	-1.3
1,449,822	+		LRK54_RS06745	0.29	+1.5
1,449,822	+		LRK54_RS06745	0.29	+0.3
1,449,823	-		LRK54_RS06745	0.29	+1.9
1,449,823	-		LRK54_RS06745	0.29	+1.9
1,449,823	-		LRK54_RS06745	0.29	+2.3
1,449,823	-		LRK54_RS06745	0.29	+2.4
1,449,823	-		LRK54_RS06745	0.29	-1.0
1,449,823	-		LRK54_RS06745	0.29	-0.8
1,449,823	-		LRK54_RS06745	0.29	-1.0
1,449,823	-		LRK54_RS06745	0.29	+3.7
1,449,823	-		LRK54_RS06745	0.29	+2.1
1,449,823	-		LRK54_RS06745	0.29	+2.1
1,449,823	-		LRK54_RS06745	0.29	-1.3
1,449,823	-		LRK54_RS06745	0.29	+4.1
1,449,823	-		LRK54_RS06745	0.29	-0.9
1,449,823	-		LRK54_RS06745	0.29	-0.6
1,450,018	+		LRK54_RS06745	0.49	+1.7
1,450,018	+		LRK54_RS06745	0.49	+0.3
1,450,019	-		LRK54_RS06745	0.49	+1.9
1,450,019	-		LRK54_RS06745	0.49	+0.5
1,450,062	+		LRK54_RS06745	0.54	+0.5
1,450,062	+		LRK54_RS06745	0.54	+3.7
1,450,062	+		LRK54_RS06745	0.54	+2.5
1,450,063	-		LRK54_RS06745	0.54	+1.5
1,450,126	+		LRK54_RS06745	0.60	-0.0
1,450,126	+		LRK54_RS06745	0.60	-1.9
1,450,127	-		LRK54_RS06745	0.60	-0.0
1,450,127	-		LRK54_RS06745	0.60	+1.5
1,450,127	-		LRK54_RS06745	0.60	+3.3
1,450,127	-		LRK54_RS06745	0.60	+2.1
1,450,127	-		LRK54_RS06745	0.60	+3.5
1,450,127	-		LRK54_RS06745	0.60	+1.3
1,450,243	+		LRK54_RS06745	0.72	-1.0
1,450,243	+		LRK54_RS06745	0.72	-1.4
1,451,054	+		LRK54_RS06750	0.16	-0.7
1,451,054	+		LRK54_RS06750	0.16	-2.4
1,451,054	+		LRK54_RS06750	0.16	+0.6
1,451,054	+		LRK54_RS06750	0.16	+0.7
1,451,054	+		LRK54_RS06750	0.16	+1.4
1,451,054	+		LRK54_RS06750	0.16	+0.2
1,451,054	+		LRK54_RS06750	0.16	-0.5
1,451,055	-		LRK54_RS06750	0.16	+1.2
1,451,055	-		LRK54_RS06750	0.16	+0.3
1,451,055	-		LRK54_RS06750	0.16	-1.8
1,451,055	-		LRK54_RS06750	0.16	+0.8
1,451,055	-		LRK54_RS06750	0.16	+0.3
1,451,055	-		LRK54_RS06750	0.16	-0.4
1,451,127	+		LRK54_RS06750	0.18	+0.3
1,451,127	+		LRK54_RS06750	0.18	+0.1
1,451,127	+		LRK54_RS06750	0.18	+0.3
1,451,128	-		LRK54_RS06750	0.19	-0.3
1,451,128	-		LRK54_RS06750	0.19	+1.3
1,451,202	+		LRK54_RS06750	0.21	-0.5
1,451,202	+		LRK54_RS06750	0.21	+0.7
1,451,202	+		LRK54_RS06750	0.21	+0.0
1,451,202	+		LRK54_RS06750	0.21	-1.6
1,451,203	-		LRK54_RS06750	0.21	+0.0
1,451,203	-		LRK54_RS06750	0.21	+0.3
1,451,203	-		LRK54_RS06750	0.21	+2.3
1,451,203	-		LRK54_RS06750	0.21	-0.5
1,451,203	-		LRK54_RS06750	0.21	-1.6
1,451,203	-		LRK54_RS06750	0.21	-0.3
1,451,203	-		LRK54_RS06750	0.21	+0.6
1,451,203	-		LRK54_RS06750	0.21	+0.5
1,451,203	-		LRK54_RS06750	0.21	+0.8
1,451,203	-		LRK54_RS06750	0.21	+0.5
1,451,203	-		LRK54_RS06750	0.21	-0.3
1,451,266	-		LRK54_RS06750	0.23	+0.7
1,451,266	-		LRK54_RS06750	0.23	-0.8
1,451,328	+		LRK54_RS06750	0.26	-0.5
1,451,328	+		LRK54_RS06750	0.26	+1.9
1,451,328	+		LRK54_RS06750	0.26	-1.0
1,451,328	+		LRK54_RS06750	0.26	+0.5
1,451,328	+		LRK54_RS06750	0.26	+0.7
1,451,328	+		LRK54_RS06750	0.26	+2.0
1,451,329	-		LRK54_RS06750	0.26	-0.4
1,451,329	-		LRK54_RS06750	0.26	-0.2
1,451,329	-		LRK54_RS06750	0.26	-0.2
1,451,329	-		LRK54_RS06750	0.26	-1.3
1,451,388	+		LRK54_RS06750	0.28	+1.7
1,451,817	+		LRK54_RS06750	0.43	+2.0
1,451,817	+		LRK54_RS06750	0.43	+2.1
1,451,817	+		LRK54_RS06750	0.43	-0.0
1,451,817	+		LRK54_RS06750	0.43	+0.1
1,451,817	+		LRK54_RS06750	0.43	+0.7
1,451,818	-		LRK54_RS06750	0.43	+1.1
1,451,818	-		LRK54_RS06750	0.43	+0.0
1,451,818	-		LRK54_RS06750	0.43	-1.0
1,451,818	-		LRK54_RS06750	0.43	-0.3
1,451,818	-		LRK54_RS06750	0.43	-0.1
1,451,818	-		LRK54_RS06750	0.43	-1.6
1,451,818	-		LRK54_RS06750	0.43	+0.3
1,452,201	+		LRK54_RS06750	0.56	+0.6
1,452,201	+		LRK54_RS06750	0.56	+1.4
1,452,201	+		LRK54_RS06750	0.56	+0.3
1,452,312	+		LRK54_RS06750	0.60	+2.2
1,452,312	+		LRK54_RS06750	0.60	+1.5
1,452,312	+		LRK54_RS06750	0.60	+0.4
1,452,312	+		LRK54_RS06750	0.60	+0.2
1,452,312	+		LRK54_RS06750	0.60	+0.2
1,452,312	+		LRK54_RS06750	0.60	+0.5
1,452,312	+		LRK54_RS06750	0.60	+1.5
1,452,312	+		LRK54_RS06750	0.60	+0.1
1,452,312	+		LRK54_RS06750	0.60	+1.1
1,452,312	+		LRK54_RS06750	0.60	+0.5
1,452,312	+		LRK54_RS06750	0.60	-1.5
1,452,312	+		LRK54_RS06750	0.60	+1.3
1,452,312	+		LRK54_RS06750	0.60	+0.6
1,452,312	+		LRK54_RS06750	0.60	+1.7
1,452,312	+		LRK54_RS06750	0.60	-0.7
1,452,312	+		LRK54_RS06750	0.60	+1.5
1,452,312	+		LRK54_RS06750	0.60	+0.2
1,452,312	+		LRK54_RS06750	0.60	+1.2
1,452,312	+		LRK54_RS06750	0.60	+0.2
1,452,312	+		LRK54_RS06750	0.60	+2.3
1,452,312	+		LRK54_RS06750	0.60	+1.8
1,452,312	+		LRK54_RS06750	0.60	+0.7
1,452,312	+		LRK54_RS06750	0.60	+2.9
1,452,312	+		LRK54_RS06750	0.60	+1.7
1,452,312	+		LRK54_RS06750	0.60	-1.0
1,452,313	-		LRK54_RS06750	0.60	-0.1
1,452,313	-		LRK54_RS06750	0.60	+1.5
1,452,313	-		LRK54_RS06750	0.60	+0.6
1,452,313	-		LRK54_RS06750	0.60	-1.5
1,452,313	-		LRK54_RS06750	0.60	+1.1
1,452,313	-		LRK54_RS06750	0.60	-0.0
1,452,313	-		LRK54_RS06750	0.60	+0.0
1,452,313	-		LRK54_RS06750	0.60	+0.0
1,452,313	-		LRK54_RS06750	0.60	+0.7
1,452,313	-		LRK54_RS06750	0.60	-1.8
1,452,313	-		LRK54_RS06750	0.60	-0.9
1,452,313	-		LRK54_RS06750	0.60	-0.8
1,452,313	-		LRK54_RS06750	0.60	-1.9
1,452,313	-		LRK54_RS06750	0.60	-0.5
1,452,313	-		LRK54_RS06750	0.60	-0.9
1,452,313	-		LRK54_RS06750	0.60	+0.7
1,452,313	-		LRK54_RS06750	0.60	-1.5
1,452,313	-		LRK54_RS06750	0.60	-1.9
1,452,313	-		LRK54_RS06750	0.60	-0.7
1,452,313	-		LRK54_RS06750	0.60	+0.3
1,452,313	-		LRK54_RS06750	0.60	-1.5
1,452,313	-		LRK54_RS06750	0.60	-2.6
1,452,395	+		LRK54_RS06750	0.63	-0.7
1,452,396	-		LRK54_RS06750	0.63	-0.0
1,452,564	+		LRK54_RS06750	0.69	+1.5
1,452,564	+		LRK54_RS06750	0.69	+0.3
1,452,564	+		LRK54_RS06750	0.69	-0.3
1,452,564	+		LRK54_RS06750	0.69	+1.2
1,452,564	+		LRK54_RS06750	0.69	-0.3
1,452,564	+		LRK54_RS06750	0.69	-0.8
1,452,564	+		LRK54_RS06750	0.69	+0.5
1,452,565	-		LRK54_RS06750	0.69	+1.1
1,452,565	-		LRK54_RS06750	0.69	-0.1
1,452,565	-		LRK54_RS06750	0.69	+0.4
1,452,565	-		LRK54_RS06750	0.69	+0.4
1,452,565	-		LRK54_RS06750	0.69	+0.7
1,452,565	-		LRK54_RS06750	0.69	-0.7
1,452,565	-		LRK54_RS06750	0.69	-1.0
1,452,565	-		LRK54_RS06750	0.69	-0.3
1,452,565	-		LRK54_RS06750	0.69	-0.0
1,452,573	+		LRK54_RS06750	0.69	+1.1
1,452,573	+		LRK54_RS06750	0.69	+0.5
1,452,573	+		LRK54_RS06750	0.69	+1.0
1,452,573	+		LRK54_RS06750	0.69	+0.7
1,452,573	+		LRK54_RS06750	0.69	+1.0
1,452,573	+		LRK54_RS06750	0.69	+0.2
1,452,573	+		LRK54_RS06750	0.69	+1.1
1,452,573	+		LRK54_RS06750	0.69	+0.2
1,452,573	+		LRK54_RS06750	0.69	+1.5
1,452,574	-		LRK54_RS06750	0.69	+0.9
1,452,574	-		LRK54_RS06750	0.69	-0.5
1,452,574	-		LRK54_RS06750	0.69	-0.5
1,452,574	-		LRK54_RS06750	0.69	+0.5
1,452,574	-		LRK54_RS06750	0.69	+0.2
1,452,574	-		LRK54_RS06750	0.69	+0.4
1,452,574	-		LRK54_RS06750	0.69	-0.8
1,452,574	-		LRK54_RS06750	0.69	+0.7
1,452,574	-		LRK54_RS06750	0.69	-0.9
1,452,574	-		LRK54_RS06750	0.69	-1.4
1,452,582	+		LRK54_RS06750	0.70	+0.8
1,452,582	+		LRK54_RS06750	0.70	+1.0
1,452,583	-		LRK54_RS06750	0.70	-0.6
1,452,663	+		LRK54_RS06750	0.73	-2.5
1,452,663	+		LRK54_RS06750	0.73	+0.8
1,452,663	+		LRK54_RS06750	0.73	+0.5
1,452,663	+		LRK54_RS06750	0.73	+0.2
1,452,663	+		LRK54_RS06750	0.73	+0.5
1,452,663	+		LRK54_RS06750	0.73	+1.6
1,452,663	+		LRK54_RS06750	0.73	+1.4
1,452,664	-		LRK54_RS06750	0.73	-0.4
1,452,664	-		LRK54_RS06750	0.73	+0.8
1,452,664	-		LRK54_RS06750	0.73	+0.2
1,452,664	-		LRK54_RS06750	0.73	+0.1
1,452,664	-		LRK54_RS06750	0.73	+1.3
1,452,664	-		LRK54_RS06750	0.73	-0.3
1,452,664	-		LRK54_RS06750	0.73	+0.7
1,452,693	+		LRK54_RS06750	0.74	+0.8
1,452,693	+		LRK54_RS06750	0.74	+0.2
1,452,693	+		LRK54_RS06750	0.74	+1.1
1,452,693	+		LRK54_RS06750	0.74	+0.3
1,452,693	+		LRK54_RS06750	0.74	-1.0
1,452,693	+		LRK54_RS06750	0.74	+0.8
1,452,693	+		LRK54_RS06750	0.74	+0.3
1,452,694	-		LRK54_RS06750	0.74	-2.2
1,452,694	-		LRK54_RS06750	0.74	+0.1
1,452,694	-		LRK54_RS06750	0.74	+0.3
1,452,694	-		LRK54_RS06750	0.74	-1.5
1,452,694	-		LRK54_RS06750	0.74	-0.3
1,452,696	+		LRK54_RS06750	0.74	+0.5
1,452,696	+		LRK54_RS06750	0.74	+0.7
1,452,696	+		LRK54_RS06750	0.74	+0.9
1,452,696	+		LRK54_RS06750	0.74	+1.1
1,452,696	+		LRK54_RS06750	0.74	+1.0
1,452,696	+		LRK54_RS06750	0.74	+1.1
1,452,696	+		LRK54_RS06750	0.74	-0.9
1,452,696	+		LRK54_RS06750	0.74	+1.4
1,452,696	+		LRK54_RS06750	0.74	+1.5
1,452,696	+		LRK54_RS06750	0.74	+1.0
1,452,696	+		LRK54_RS06750	0.74	-0.2
1,452,696	+		LRK54_RS06750	0.74	-0.8
1,452,696	+		LRK54_RS06750	0.74	+0.4
1,452,696	+		LRK54_RS06750	0.74	-0.8
1,452,696	+		LRK54_RS06750	0.74	-0.1
1,452,696	+		LRK54_RS06750	0.74	+1.4
1,452,696	+		LRK54_RS06750	0.74	-1.2
1,452,696	+		LRK54_RS06750	0.74	-0.5
1,452,696	+		LRK54_RS06750	0.74	+0.3
1,452,696	+		LRK54_RS06750	0.74	+0.0
1,452,696	+		LRK54_RS06750	0.74	+0.0
1,452,696	+		LRK54_RS06750	0.74	+1.2
1,452,696	+		LRK54_RS06750	0.74	-0.5
1,452,697	-		LRK54_RS06750	0.74	+0.8
1,452,697	-		LRK54_RS06750	0.74	+0.2
1,452,697	-		LRK54_RS06750	0.74	-0.9
1,452,697	-		LRK54_RS06750	0.74	-0.7
1,452,697	-		LRK54_RS06750	0.74	+1.0
1,452,697	-		LRK54_RS06750	0.74	-0.8
1,452,697	-		LRK54_RS06750	0.74	-0.7
1,452,697	-		LRK54_RS06750	0.74	+1.0
1,452,697	-		LRK54_RS06750	0.74	+0.5
1,452,697	-		LRK54_RS06750	0.74	-1.5
1,452,697	-		LRK54_RS06750	0.74	-0.1
1,452,697	-		LRK54_RS06750	0.74	-2.6
1,452,697	-		LRK54_RS06750	0.74	-0.7
1,452,697	-		LRK54_RS06750	0.74	+0.5
1,452,697	-		LRK54_RS06750	0.74	-0.5
1,452,697	-		LRK54_RS06750	0.74	-0.9
1,452,697	-		LRK54_RS06750	0.74	+0.3
1,452,697	-		LRK54_RS06750	0.74	+0.3
1,452,697	-		LRK54_RS06750	0.74	+1.2
1,452,697	-		LRK54_RS06750	0.74	+1.2
1,452,697	-		LRK54_RS06750	0.74	-1.1
1,452,697	-		LRK54_RS06750	0.74	+0.4
1,452,697	-		LRK54_RS06750	0.74	-0.6
1,452,697	-		LRK54_RS06750	0.74	-0.2
1,452,697	-		LRK54_RS06750	0.74	+0.7
1,452,697	-		LRK54_RS06750	0.74	-0.7
1,452,697	-		LRK54_RS06750	0.74	+1.6
1,452,697	-		LRK54_RS06750	0.74	-0.4
1,452,697	-		LRK54_RS06750	0.74	+0.5
1,452,697	-		LRK54_RS06750	0.74	-0.8
1,452,697	-		LRK54_RS06750	0.74	+0.3
1,452,697	-		LRK54_RS06750	0.74	+0.9
1,452,837	+		LRK54_RS06750	0.79	+1.5
1,452,837	+		LRK54_RS06750	0.79	+1.2
1,452,837	+		LRK54_RS06750	0.79	-1.5
1,452,837	+		LRK54_RS06750	0.79	-0.8
1,452,837	+		LRK54_RS06750	0.79	+0.1
1,452,838	-		LRK54_RS06750	0.79	-0.3
1,452,838	-		LRK54_RS06750	0.79	+1.3
1,452,838	-		LRK54_RS06750	0.79	-0.0
1,452,838	-		LRK54_RS06750	0.79	-0.3
1,452,838	-		LRK54_RS06750	0.79	+0.6
1,452,838	-		LRK54_RS06750	0.79	-1.3
1,452,888	+		LRK54_RS06750	0.80	+0.2
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1,453,002	+		LRK54_RS06750	0.84	+1.3
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1,454,231	-		LRK54_RS06755	0.35	-0.6
1,454,231	-		LRK54_RS06755	0.35	-2.4