Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06745

Experiment: R2A with Calcium chloride 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Calcium chloride 250 mM
1,448,637	-		LRK54_RS06735	0.78	-0.0
1,448,637	-		LRK54_RS06735	0.78	-0.5
1,448,690	+		LRK54_RS06735	0.87	-0.6
1,448,690	+		LRK54_RS06735	0.87	+0.2
1,448,690	+		LRK54_RS06735	0.87	-0.0
1,448,690	+		LRK54_RS06735	0.87	+0.2
1,448,690	+		LRK54_RS06735	0.87	+1.5
1,448,690	+		LRK54_RS06735	0.87	+1.5
1,448,690	+		LRK54_RS06735	0.87	+1.0
1,448,690	+		LRK54_RS06735	0.87	+1.3
1,448,690	+		LRK54_RS06735	0.87	-0.6
1,448,690	+		LRK54_RS06735	0.87	-1.0
1,448,690	+		LRK54_RS06735	0.87	+0.8
1,448,690	+		LRK54_RS06735	0.87	-1.0
1,448,690	+		LRK54_RS06735	0.87	-0.0
1,448,690	+		LRK54_RS06735	0.87	+1.1
1,448,690	+		LRK54_RS06735	0.87	-0.8
1,448,690	+		LRK54_RS06735	0.87	-0.0
1,448,690	+		LRK54_RS06735	0.87	-1.3
1,448,690	+		LRK54_RS06735	0.87	-1.3
1,448,690	+		LRK54_RS06735	0.87	-0.5
1,448,690	+		LRK54_RS06735	0.87	+1.0
1,448,690	+		LRK54_RS06735	0.87	+1.0
1,448,690	+		LRK54_RS06735	0.87	+0.2
1,448,690	+		LRK54_RS06735	0.87	+0.8
1,448,690	+		LRK54_RS06735	0.87	-1.0
1,448,690	+		LRK54_RS06735	0.87	+1.3
1,448,691	-		LRK54_RS06735	0.87	-1.5
1,448,691	-		LRK54_RS06735	0.87	+0.6
1,448,691	-		LRK54_RS06735	0.87	-0.6
1,448,691	-		LRK54_RS06735	0.87	+0.2
1,448,691	-		LRK54_RS06735	0.87	+0.6
1,448,691	-		LRK54_RS06735	0.87	-0.2
1,448,691	-		LRK54_RS06735	0.87	-0.3
1,448,691	-		LRK54_RS06735	0.87	+1.0
1,448,691	-		LRK54_RS06735	0.87	-0.8
1,448,691	-		LRK54_RS06735	0.87	+0.4
1,448,691	-		LRK54_RS06735	0.87	+2.1
1,448,691	-		LRK54_RS06735	0.87	+0.2
1,448,691	-		LRK54_RS06735	0.87	+1.5
1,448,691	-		LRK54_RS06735	0.87	+0.9
1,448,691	-		LRK54_RS06735	0.87	+0.9
1,448,691	-		LRK54_RS06735	0.87	-1.6
1,448,691	-		LRK54_RS06735	0.87	-0.5
1,448,691	-		LRK54_RS06735	0.87	-0.0
1,448,691	-		LRK54_RS06735	0.87	+0.2
1,448,691	-		LRK54_RS06735	0.87	+0.7
1,448,691	-		LRK54_RS06735	0.87	-0.3
1,448,691	-		LRK54_RS06735	0.87	-0.9
1,448,691	-		LRK54_RS06735	0.87	-1.0
1,448,691	-		LRK54_RS06735	0.87	+0.1
1,448,691	-		LRK54_RS06735	0.87	-1.3
1,448,691	-		LRK54_RS06735	0.87	-1.0
1,448,750	+				-0.7
1,448,750	+				-0.4
1,448,750	+				+0.3
1,448,750	+				+1.0
1,448,750	+				-0.0
1,448,750	+				+0.5
1,448,750	+				-0.8
1,448,750	+				+0.2
1,448,750	+				+1.3
1,448,751	-				+0.7
1,448,751	-				-2.0
1,448,751	-				-1.5
1,448,751	-				-0.1
1,448,751	-				-1.0
1,448,751	-				-1.8
1,448,751	-				+0.1
1,448,751	-				+0.4
1,448,751	-				+0.2
1,448,751	-				-0.6
1,448,751	-				-1.1
1,448,751	-				-1.6
1,448,751	-				-0.1
1,448,751	-				-2.1
1,448,751	-				-1.7
1,448,751	-				+2.1
1,448,751	-				+2.1
1,448,751	-				+1.0
1,448,781	+				-1.3
1,448,781	+				+0.2
1,448,781	+				-0.6
1,448,781	+				-0.8
1,448,781	+				-1.7
1,448,781	+				-0.9
1,448,781	+				-1.3
1,448,781	+				-1.5
1,448,781	+				-0.5
1,448,781	+				-0.3
1,448,781	+				+0.2
1,448,781	+				+0.7
1,448,781	+				-0.5
1,448,781	+				-0.3
1,448,781	+				+0.9
1,448,782	-				+0.4
1,448,782	-				-1.3
1,448,782	-				-1.2
1,448,782	-				+0.3
1,448,782	-				+0.1
1,448,782	-				-1.2
1,448,782	-				-0.2
1,448,782	-				+1.7
1,448,782	-				+0.3
1,448,782	-				-0.3
1,448,782	-				+0.9
1,448,782	-				-0.4
1,448,782	-				+0.4
1,448,782	-				+0.1
1,448,782	-				+0.0
1,448,782	-				-0.7
1,448,782	-				-0.1
1,448,782	-				+0.9
1,448,782	-				+0.6
1,448,782	-				-0.1
1,448,782	-				-1.1
1,448,782	-				-0.9
1,448,782	-				-0.8
1,448,782	-				-0.8
1,448,782	-				-0.3
1,449,005	+		LRK54_RS06740	0.34	-2.5
1,449,005	+		LRK54_RS06740	0.34	+0.0
1,449,005	+		LRK54_RS06740	0.34	+0.0
1,449,005	+		LRK54_RS06740	0.34	-0.6
1,449,005	+		LRK54_RS06740	0.34	+0.8
1,449,005	+		LRK54_RS06740	0.34	+0.4
1,449,005	+		LRK54_RS06740	0.34	-0.2
1,449,005	+		LRK54_RS06740	0.34	+0.3
1,449,005	+		LRK54_RS06740	0.34	-1.2
1,449,006	-		LRK54_RS06740	0.34	-1.5
1,449,006	-		LRK54_RS06740	0.34	+0.5
1,449,006	-		LRK54_RS06740	0.34	+0.3
1,449,006	-		LRK54_RS06740	0.34	-1.0
1,449,006	-		LRK54_RS06740	0.34	+0.5
1,449,006	-		LRK54_RS06740	0.34	-0.6
1,449,116	+		LRK54_RS06740	0.53	-0.5
1,449,116	+		LRK54_RS06740	0.53	+0.2
1,449,117	-		LRK54_RS06740	0.53	-0.8
1,449,117	-		LRK54_RS06740	0.53	+0.1
1,449,117	-		LRK54_RS06740	0.53	+1.9
1,449,232	+		LRK54_RS06740	0.72	-0.5
1,449,232	+		LRK54_RS06740	0.72	-0.2
1,449,232	+		LRK54_RS06740	0.72	-0.4
1,449,232	+		LRK54_RS06740	0.72	+0.5
1,449,232	+		LRK54_RS06740	0.72	-1.8
1,449,232	+				-1.0
1,449,232	+		LRK54_RS06740	0.72	-0.8
1,449,233	-		LRK54_RS06740	0.72	-1.8
1,449,233	-		LRK54_RS06740	0.72	+0.4
1,449,233	-		LRK54_RS06740	0.72	-0.3
1,449,233	-		LRK54_RS06740	0.72	-0.1
1,449,233	-		LRK54_RS06740	0.72	-0.5
1,449,233	-		LRK54_RS06740	0.72	+0.5
1,449,233	-		LRK54_RS06740	0.72	-0.6
1,449,233	-		LRK54_RS06740	0.72	-2.0
1,449,233	-		LRK54_RS06740	0.72	-0.2
1,449,233	-		LRK54_RS06740	0.72	-1.9
1,449,287	+		LRK54_RS06740	0.81	+0.5
1,449,287	+		LRK54_RS06740	0.81	-1.5
1,449,287	+		LRK54_RS06740	0.81	-0.1
1,449,287	+		LRK54_RS06740	0.81	-0.8
1,449,287	+		LRK54_RS06740	0.81	-1.7
1,449,287	+		LRK54_RS06740	0.81	-1.5
1,449,287	+		LRK54_RS06740	0.81	-1.0
1,449,287	+		LRK54_RS06740	0.81	+0.7
1,449,287	+		LRK54_RS06740	0.81	-1.7
1,449,287	+		LRK54_RS06740	0.81	-0.8
1,449,287	+		LRK54_RS06740	0.81	+1.5
1,449,287	+		LRK54_RS06740	0.81	-0.8
1,449,287	+		LRK54_RS06740	0.81	-0.5
1,449,287	+		LRK54_RS06740	0.81	-3.2
1,449,287	+		LRK54_RS06740	0.81	-0.1
1,449,288	-		LRK54_RS06740	0.82	+0.8
1,449,288	-		LRK54_RS06740	0.82	-1.3
1,449,288	-		LRK54_RS06740	0.82	+1.4
1,449,288	-		LRK54_RS06740	0.82	+0.6
1,449,288	-		LRK54_RS06740	0.82	-0.2
1,449,288	-		LRK54_RS06740	0.82	-0.9
1,449,288	-		LRK54_RS06740	0.82	+1.1
1,449,288	-		LRK54_RS06740	0.82	+0.5
1,449,288	-		LRK54_RS06740	0.82	-1.7
1,449,288	-		LRK54_RS06740	0.82	-0.5
1,449,288	-		LRK54_RS06740	0.82	+4.0
1,449,288	-		LRK54_RS06740	0.82	-0.7
1,449,288	-		LRK54_RS06740	0.82	-0.7
1,449,288	-		LRK54_RS06740	0.82	-1.0
1,449,400	+				-1.3
1,449,400	+				-0.7
1,449,447	+				+0.1
1,449,447	+				-1.8
1,449,447	+				+0.0
1,449,447	+				-0.3
1,449,447	+				-1.8
1,449,447	+				+1.9
1,449,447	+				-2.5
1,449,447	+				-0.0
1,449,447	+				+1.6
1,449,447	+				+1.5
1,449,447	+				-0.0
1,449,447	+				-0.5
1,449,448	-				-0.6
1,449,448	-				-0.4
1,449,448	-				+0.8
1,449,448	-				+0.2
1,449,448	-				-2.8
1,449,448	-				-0.8
1,449,448	-				-2.3
1,449,448	-				+1.8
1,449,448	-				-0.3
1,449,448	-				+0.4
1,449,449	+				+0.7
1,449,449	+				-1.0
1,449,449	+				+0.5
1,449,449	+				+0.6
1,449,449	+				-0.9
1,449,449	+				-0.5
1,449,449	+				-0.8
1,449,449	+				-0.6
1,449,449	+				-0.5
1,449,449	+				-1.0
1,449,449	+				-0.3
1,449,449	+				-1.4
1,449,449	+				+0.7
1,449,449	+				+1.5
1,449,449	+				-1.9
1,449,449	+				-0.2
1,449,449	+				-0.7
1,449,449	+				+0.7
1,449,449	+				-1.3
1,449,449	+				+1.0
1,449,449	+				+0.6
1,449,449	+				+0.3
1,449,449	+				+0.1
1,449,449	+				+0.0
1,449,449	+				-0.3
1,449,450	-				-0.5
1,449,450	-				-1.0
1,449,450	-				-2.3
1,449,450	-				-1.1
1,449,450	-				+0.0
1,449,450	-				-1.1
1,449,450	-				+0.5
1,449,450	-				-0.0
1,449,450	-				-1.3
1,449,450	-				-1.5
1,449,450	-				+0.3
1,449,450	-				-0.5
1,449,450	-				+1.4
1,449,450	-				+1.0
1,449,478	+				+0.9
1,449,478	+				-0.8
1,449,478	+				+0.4
1,449,478	+				+1.5
1,449,478	+				-0.6
1,449,479	-				+0.4
1,449,479	-				+0.1
1,449,479	-				-0.2
1,449,479	-				+0.1
1,449,479	-				-0.8
1,449,479	-				+1.1
1,449,489	+				-0.4
1,449,489	+				-0.8
1,449,489	+				-1.4
1,449,489	+				-2.1
1,449,489	+				-0.0
1,449,489	+				+0.8
1,449,489	+				-0.0
1,449,489	+				+1.0
1,449,489	+				+0.7
1,449,489	+				+0.5
1,449,489	+				+1.1
1,449,489	+				-0.5
1,449,489	+				-0.5
1,449,489	+				-2.0
1,449,489	+				+0.2
1,449,489	+				-0.8
1,449,489	+				+2.4
1,449,489	+				-0.1
1,449,489	+				-0.9
1,449,489	+				+0.6
1,449,489	+				-0.8
1,449,489	+				-1.4
1,449,489	+				-1.9
1,449,489	+				+1.5
1,449,489	+				+0.5
1,449,489	+				-1.6
1,449,489	+				-0.8
1,449,490	-				+1.3
1,449,490	-				+1.1
1,449,490	-				+1.4
1,449,490	-				-2.3
1,449,490	-				+0.8
1,449,490	-				+0.9
1,449,490	-				-0.5
1,449,490	-				-1.3
1,449,490	-				-3.0
1,449,490	-				+0.2
1,449,490	-				+1.8
1,449,490	-				-0.7
1,449,490	-				-1.3
1,449,490	-				+0.5
1,449,490	-				+1.0
1,449,490	-				-0.3
1,449,490	-				-0.0
1,449,490	-				+0.5
1,449,490	-				+0.2
1,449,490	-				+2.0
1,449,490	-				+0.5
1,449,490	-				-0.2
1,449,490	-				+2.9
1,449,490	-				-2.0
1,449,490	-				+1.9
1,449,822	+		LRK54_RS06745	0.29	+2.0
1,449,822	+		LRK54_RS06745	0.29	+0.6
1,449,822	+		LRK54_RS06745	0.29	-2.0
1,449,822	+		LRK54_RS06745	0.29	+2.9
1,449,822	+		LRK54_RS06745	0.29	+1.6
1,449,822	+		LRK54_RS06745	0.29	-1.1
1,449,822	+		LRK54_RS06745	0.29	-2.0
1,449,822	+		LRK54_RS06745	0.29	+4.0
1,449,822	+		LRK54_RS06745	0.29	-0.1
1,449,822	+		LRK54_RS06745	0.29	+2.0
1,449,822	+		LRK54_RS06745	0.29	+1.1
1,449,822	+		LRK54_RS06745	0.29	+1.2
1,449,822	+		LRK54_RS06745	0.29	-0.0
1,449,822	+		LRK54_RS06745	0.29	-1.1
1,449,822	+		LRK54_RS06745	0.29	+3.0
1,449,822	+		LRK54_RS06745	0.29	+3.5
1,449,822	+		LRK54_RS06745	0.29	+0.5
1,449,822	+		LRK54_RS06745	0.29	+0.4
1,449,822	+		LRK54_RS06745	0.29	+2.5
1,449,822	+		LRK54_RS06745	0.29	+1.3
1,449,822	+		LRK54_RS06745	0.29	-1.3
1,449,822	+		LRK54_RS06745	0.29	+1.5
1,449,822	+		LRK54_RS06745	0.29	+0.3
1,449,823	-		LRK54_RS06745	0.29	+1.9
1,449,823	-		LRK54_RS06745	0.29	+1.9
1,449,823	-		LRK54_RS06745	0.29	+2.3
1,449,823	-		LRK54_RS06745	0.29	+2.4
1,449,823	-		LRK54_RS06745	0.29	-1.0
1,449,823	-		LRK54_RS06745	0.29	-0.8
1,449,823	-		LRK54_RS06745	0.29	-1.0
1,449,823	-		LRK54_RS06745	0.29	+3.7
1,449,823	-		LRK54_RS06745	0.29	+2.1
1,449,823	-		LRK54_RS06745	0.29	+2.1
1,449,823	-		LRK54_RS06745	0.29	-1.3
1,449,823	-		LRK54_RS06745	0.29	+4.1
1,449,823	-		LRK54_RS06745	0.29	-0.9
1,449,823	-		LRK54_RS06745	0.29	-0.6
1,450,018	+		LRK54_RS06745	0.49	+1.7
1,450,018	+		LRK54_RS06745	0.49	+0.3
1,450,019	-		LRK54_RS06745	0.49	+1.9
1,450,019	-		LRK54_RS06745	0.49	+0.5
1,450,062	+		LRK54_RS06745	0.54	+0.5
1,450,062	+		LRK54_RS06745	0.54	+3.7
1,450,062	+		LRK54_RS06745	0.54	+2.5
1,450,063	-		LRK54_RS06745	0.54	+1.5
1,450,126	+		LRK54_RS06745	0.60	-0.0
1,450,126	+		LRK54_RS06745	0.60	-1.9
1,450,127	-		LRK54_RS06745	0.60	-0.0
1,450,127	-		LRK54_RS06745	0.60	+1.5
1,450,127	-		LRK54_RS06745	0.60	+3.3
1,450,127	-		LRK54_RS06745	0.60	+2.1
1,450,127	-		LRK54_RS06745	0.60	+3.5
1,450,127	-		LRK54_RS06745	0.60	+1.3
1,450,243	+		LRK54_RS06745	0.72	-1.0
1,450,243	+		LRK54_RS06745	0.72	-1.4
1,451,054	+		LRK54_RS06750	0.16	-0.7
1,451,054	+		LRK54_RS06750	0.16	-2.4
1,451,054	+		LRK54_RS06750	0.16	+0.6
1,451,054	+		LRK54_RS06750	0.16	+0.7
1,451,054	+		LRK54_RS06750	0.16	+1.4
1,451,054	+		LRK54_RS06750	0.16	+0.2
1,451,054	+		LRK54_RS06750	0.16	-0.5
1,451,055	-		LRK54_RS06750	0.16	+1.2
1,451,055	-		LRK54_RS06750	0.16	+0.3
1,451,055	-		LRK54_RS06750	0.16	-1.8
1,451,055	-		LRK54_RS06750	0.16	+0.8
1,451,055	-		LRK54_RS06750	0.16	+0.3
1,451,055	-		LRK54_RS06750	0.16	-0.4
1,451,127	+		LRK54_RS06750	0.18	+0.3
1,451,127	+		LRK54_RS06750	0.18	+0.1
1,451,127	+		LRK54_RS06750	0.18	+0.3
1,451,128	-		LRK54_RS06750	0.19	-0.3
1,451,128	-		LRK54_RS06750	0.19	+1.3
1,451,202	+		LRK54_RS06750	0.21	-0.5
1,451,202	+		LRK54_RS06750	0.21	+0.7
1,451,202	+		LRK54_RS06750	0.21	+0.0
1,451,202	+		LRK54_RS06750	0.21	-1.6
1,451,203	-		LRK54_RS06750	0.21	+0.0
1,451,203	-		LRK54_RS06750	0.21	+0.3
1,451,203	-		LRK54_RS06750	0.21	+2.3
1,451,203	-		LRK54_RS06750	0.21	-0.5
1,451,203	-		LRK54_RS06750	0.21	-1.6
1,451,203	-		LRK54_RS06750	0.21	-0.3
1,451,203	-		LRK54_RS06750	0.21	+0.6
1,451,203	-		LRK54_RS06750	0.21	+0.5
1,451,203	-		LRK54_RS06750	0.21	+0.8
1,451,203	-		LRK54_RS06750	0.21	+0.5
1,451,203	-		LRK54_RS06750	0.21	-0.3
1,451,266	-		LRK54_RS06750	0.23	+0.7
1,451,266	-		LRK54_RS06750	0.23	-0.8
1,451,328	+		LRK54_RS06750	0.26	-0.5
1,451,328	+		LRK54_RS06750	0.26	+1.9
1,451,328	+		LRK54_RS06750	0.26	-1.0
1,451,328	+		LRK54_RS06750	0.26	+0.5
1,451,328	+		LRK54_RS06750	0.26	+0.7
1,451,328	+		LRK54_RS06750	0.26	+2.0
1,451,329	-		LRK54_RS06750	0.26	-0.4
1,451,329	-		LRK54_RS06750	0.26	-0.2
1,451,329	-		LRK54_RS06750	0.26	-0.2
1,451,329	-		LRK54_RS06750	0.26	-1.3
1,451,388	+		LRK54_RS06750	0.28	+1.7