Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_375

Experiment: Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_373 and Ac3H11_374 are separated by 45 nucleotidesAc3H11_374 and Ac3H11_375 are separated by 70 nucleotidesAc3H11_375 and Ac3H11_376 are separated by 301 nucleotidesAc3H11_376 and Ac3H11_564 are separated by 16 nucleotidesAc3H11_564 and Ac3H11_377 are separated by 63 nucleotides Ac3H11_373 - Excinuclease ABC subunit C, at 47,900 to 49,921 _373 Ac3H11_374 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5), at 49,967 to 50,533 _374 Ac3H11_375 - Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83), at 50,604 to 51,698 _375 Ac3H11_376 - DNA-binding protein HU-beta, at 52,000 to 52,272 _376 Ac3H11_564 - tRNA-Val-TAC, at 52,289 to 52,361 _564 Ac3H11_377 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 52,425 to 54,353 _377 Position (kb) 50 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 49.643 kb on + strand, within Ac3H11_373at 49.904 kb on + strandat 49.906 kb on + strandat 49.919 kb on + strandat 49.919 kb on + strandat 49.919 kb on + strandat 49.919 kb on + strandat 49.920 kb on - strandat 49.920 kb on - strandat 49.920 kb on - strandat 49.920 kb on - strandat 49.920 kb on - strandat 50.579 kb on + strandat 50.748 kb on + strand, within Ac3H11_375at 50.748 kb on + strand, within Ac3H11_375at 50.749 kb on - strand, within Ac3H11_375at 50.751 kb on + strand, within Ac3H11_375at 50.752 kb on - strand, within Ac3H11_375at 50.817 kb on + strand, within Ac3H11_375at 50.817 kb on + strand, within Ac3H11_375at 50.817 kb on + strand, within Ac3H11_375at 50.817 kb on + strand, within Ac3H11_375at 50.818 kb on - strand, within Ac3H11_375at 50.818 kb on - strand, within Ac3H11_375at 50.818 kb on - strand, within Ac3H11_375at 50.818 kb on - strand, within Ac3H11_375at 50.818 kb on - strand, within Ac3H11_375at 50.818 kb on - strand, within Ac3H11_375at 50.907 kb on + strand, within Ac3H11_375at 50.907 kb on + strand, within Ac3H11_375at 50.907 kb on + strand, within Ac3H11_375at 50.907 kb on + strand, within Ac3H11_375at 50.908 kb on - strand, within Ac3H11_375at 50.908 kb on - strand, within Ac3H11_375at 50.908 kb on - strand, within Ac3H11_375at 51.034 kb on - strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.058 kb on - strand, within Ac3H11_375at 51.058 kb on - strand, within Ac3H11_375at 51.058 kb on - strand, within Ac3H11_375at 51.058 kb on - strand, within Ac3H11_375at 51.058 kb on - strand, within Ac3H11_375at 51.253 kb on - strand, within Ac3H11_375at 51.739 kb on + strandat 51.739 kb on + strandat 51.790 kb on + strandat 51.791 kb on - strandat 51.796 kb on + strandat 51.834 kb on + strandat 51.834 kb on + strandat 51.834 kb on + strandat 51.889 kb on - strandat 51.889 kb on - strandat 52.191 kb on + strand, within Ac3H11_376

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.005 mg/ml
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49,643 + Ac3H11_373 0.86 -1.3
49,904 + -0.6
49,906 + -0.7
49,919 + +0.4
49,919 + +0.1
49,919 + +0.3
49,919 + +0.4
49,920 - +0.4
49,920 - +0.9
49,920 - -0.3
49,920 - +0.8
49,920 - +0.6
50,579 + -1.3
50,748 + Ac3H11_375 0.13 +0.0
50,748 + Ac3H11_375 0.13 -1.5
50,749 - Ac3H11_375 0.13 +2.2
50,751 + Ac3H11_375 0.13 +1.2
50,752 - Ac3H11_375 0.14 +0.0
50,817 + Ac3H11_375 0.19 +0.4
50,817 + Ac3H11_375 0.19 +0.6
50,817 + Ac3H11_375 0.19 +0.2
50,817 + Ac3H11_375 0.19 -0.6
50,818 - Ac3H11_375 0.20 -0.1
50,818 - Ac3H11_375 0.20 -0.0
50,818 - Ac3H11_375 0.20 -0.1
50,818 - Ac3H11_375 0.20 +0.6
50,818 - Ac3H11_375 0.20 -0.3
50,818 - Ac3H11_375 0.20 +0.1
50,907 + Ac3H11_375 0.28 -0.1
50,907 + Ac3H11_375 0.28 +0.1
50,907 + Ac3H11_375 0.28 -0.1
50,907 + Ac3H11_375 0.28 -0.2
50,908 - Ac3H11_375 0.28 -0.7
50,908 - Ac3H11_375 0.28 -0.1
50,908 - Ac3H11_375 0.28 +0.4
51,034 - Ac3H11_375 0.39 -0.1
51,057 + Ac3H11_375 0.41 +0.7
51,057 + Ac3H11_375 0.41 -0.7
51,057 + Ac3H11_375 0.41 -0.1
51,057 + Ac3H11_375 0.41 +0.6
51,057 + Ac3H11_375 0.41 +1.8
51,057 + Ac3H11_375 0.41 -0.0
51,057 + Ac3H11_375 0.41 +1.1
51,057 + Ac3H11_375 0.41 +0.4
51,058 - Ac3H11_375 0.41 +0.5
51,058 - Ac3H11_375 0.41 +0.4
51,058 - Ac3H11_375 0.41 +0.2
51,058 - Ac3H11_375 0.41 -0.8
51,058 - Ac3H11_375 0.41 -0.6
51,253 - Ac3H11_375 0.59 +0.3
51,739 + -0.3
51,739 + -0.3
51,790 + -2.0
51,791 - -0.4
51,796 + +0.1
51,834 + +1.7
51,834 + -2.1
51,834 + -0.6
51,889 - -0.4
51,889 - -0.8
52,191 + Ac3H11_376 0.70 -3.3

Or see this region's nucleotide sequence