Experiment: Cephalothin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1814 and Ac3H11_1815 overlap by 17 nucleotides Ac3H11_1815 and Ac3H11_1816 are separated by 28 nucleotides Ac3H11_1816 and Ac3H11_1817 are separated by 55 nucleotides
Ac3H11_1814 - low-specificity D-threonine aldolase, at 19,791 to 20,960
_1814
Ac3H11_1815 - Phosphoglycerate mutase (EC 5.4.2.1), at 20,944 to 21,585
_1815
Ac3H11_1816 - Probable lipoprotein transmembrane, at 21,614 to 22,228
_1816
Ac3H11_1817 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 22,284 to 23,225
_1817
Position (kb) 20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2 at 19.966 kb on + strand, within Ac3H11_1814 at 19.999 kb on + strand, within Ac3H11_1814 at 20.396 kb on - strand, within Ac3H11_1814 at 20.396 kb on - strand, within Ac3H11_1814 at 21.108 kb on - strand, within Ac3H11_1815 at 21.239 kb on + strand, within Ac3H11_1815 at 21.239 kb on + strand, within Ac3H11_1815 at 21.239 kb on + strand, within Ac3H11_1815 at 21.240 kb on - strand, within Ac3H11_1815 at 21.240 kb on - strand, within Ac3H11_1815 at 21.240 kb on - strand, within Ac3H11_1815 at 21.425 kb on + strand, within Ac3H11_1815 at 21.425 kb on + strand, within Ac3H11_1815 at 21.425 kb on + strand, within Ac3H11_1815 at 21.426 kb on - strand, within Ac3H11_1815 at 21.426 kb on - strand, within Ac3H11_1815 at 21.426 kb on - strand, within Ac3H11_1815 at 21.426 kb on - strand, within Ac3H11_1815 at 21.426 kb on - strand, within Ac3H11_1815 at 21.426 kb on - strand, within Ac3H11_1815 at 21.426 kb on - strand, within Ac3H11_1815 at 21.426 kb on - strand, within Ac3H11_1815 at 21.426 kb on - strand, within Ac3H11_1815 at 21.426 kb on - strand, within Ac3H11_1815 at 21.426 kb on - strand, within Ac3H11_1815 at 21.426 kb on - strand, within Ac3H11_1815 at 21.708 kb on + strand, within Ac3H11_1816 at 21.708 kb on + strand, within Ac3H11_1816 at 21.708 kb on + strand, within Ac3H11_1816 at 21.708 kb on + strand, within Ac3H11_1816 at 21.708 kb on + strand, within Ac3H11_1816 at 21.708 kb on + strand, within Ac3H11_1816 at 21.709 kb on - strand, within Ac3H11_1816 at 21.759 kb on + strand, within Ac3H11_1816 at 21.760 kb on - strand, within Ac3H11_1816 at 21.760 kb on - strand, within Ac3H11_1816 at 21.903 kb on + strand, within Ac3H11_1816 at 21.903 kb on + strand at 21.903 kb on + strand, within Ac3H11_1816 at 21.904 kb on - strand, within Ac3H11_1816 at 21.912 kb on + strand, within Ac3H11_1816 at 21.930 kb on + strand, within Ac3H11_1816 at 21.930 kb on + strand, within Ac3H11_1816 at 21.931 kb on - strand, within Ac3H11_1816 at 21.931 kb on - strand, within Ac3H11_1816 at 22.086 kb on + strand, within Ac3H11_1816 at 22.086 kb on + strand, within Ac3H11_1816 at 22.087 kb on - strand, within Ac3H11_1816 at 22.408 kb on + strand, within Ac3H11_1817 at 22.408 kb on + strand, within Ac3H11_1817 at 22.408 kb on + strand, within Ac3H11_1817 at 22.409 kb on - strand, within Ac3H11_1817
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.005 mg/ml remove 19,966 + Ac3H11_1814 0.15 +1.2 19,999 + Ac3H11_1814 0.18 +0.1 20,396 - Ac3H11_1814 0.52 +1.0 20,396 - Ac3H11_1814 0.52 +2.1 21,108 - Ac3H11_1815 0.26 +0.2 21,239 + Ac3H11_1815 0.46 -0.5 21,239 + Ac3H11_1815 0.46 +0.6 21,239 + Ac3H11_1815 0.46 -1.2 21,240 - Ac3H11_1815 0.46 +1.8 21,240 - Ac3H11_1815 0.46 -1.1 21,240 - Ac3H11_1815 0.46 -0.7 21,425 + Ac3H11_1815 0.75 -0.7 21,425 + Ac3H11_1815 0.75 +0.6 21,425 + Ac3H11_1815 0.75 -0.8 21,426 - Ac3H11_1815 0.75 +0.2 21,426 - Ac3H11_1815 0.75 +0.0 21,426 - Ac3H11_1815 0.75 -0.8 21,426 - Ac3H11_1815 0.75 +0.6 21,426 - Ac3H11_1815 0.75 +0.2 21,426 - Ac3H11_1815 0.75 +0.7 21,426 - Ac3H11_1815 0.75 +0.2 21,426 - Ac3H11_1815 0.75 -0.8 21,426 - Ac3H11_1815 0.75 +0.3 21,426 - Ac3H11_1815 0.75 -0.5 21,426 - Ac3H11_1815 0.75 +0.7 21,426 - Ac3H11_1815 0.75 +0.6 21,708 + Ac3H11_1816 0.15 -1.1 21,708 + Ac3H11_1816 0.15 -0.9 21,708 + Ac3H11_1816 0.15 -0.2 21,708 + Ac3H11_1816 0.15 -0.9 21,708 + Ac3H11_1816 0.15 -0.6 21,708 + Ac3H11_1816 0.15 +0.7 21,709 - Ac3H11_1816 0.15 +0.3 21,759 + Ac3H11_1816 0.24 -0.3 21,760 - Ac3H11_1816 0.24 -1.7 21,760 - Ac3H11_1816 0.24 -0.3 21,903 + Ac3H11_1816 0.47 -0.4 21,903 + +1.8 21,903 + Ac3H11_1816 0.47 +0.8 21,904 - Ac3H11_1816 0.47 -0.1 21,912 + Ac3H11_1816 0.48 -0.6 21,930 + Ac3H11_1816 0.51 +0.0 21,930 + Ac3H11_1816 0.51 -0.7 21,931 - Ac3H11_1816 0.52 +0.3 21,931 - Ac3H11_1816 0.52 -0.3 22,086 + Ac3H11_1816 0.77 +0.5 22,086 + Ac3H11_1816 0.77 -1.0 22,087 - Ac3H11_1816 0.77 -1.8 22,408 + Ac3H11_1817 0.13 +0.7 22,408 + Ac3H11_1817 0.13 -0.8 22,408 + Ac3H11_1817 0.13 -0.6 22,409 - Ac3H11_1817 0.13 -0.3
Or see this region's nucleotide sequence