Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1482

Experiment: Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1481 and Ac3H11_1482 are separated by 138 nucleotidesAc3H11_1482 and Ac3H11_1483 are separated by 10 nucleotidesAc3H11_1483 and Ac3H11_1484 are separated by 70 nucleotides Ac3H11_1481 - putative exported protein, at 60,927 to 61,907 _1481 Ac3H11_1482 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4), at 62,046 to 62,870 _1482 Ac3H11_1483 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-), at 62,881 to 63,630 _1483 Ac3H11_1484 - 5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10), at 63,701 to 64,156 _1484 Position (kb) 62 63Strain fitness (log2 ratio) -2 -1 0 1at 61.064 kb on + strand, within Ac3H11_1481at 61.064 kb on + strand, within Ac3H11_1481at 61.065 kb on - strand, within Ac3H11_1481at 61.065 kb on - strand, within Ac3H11_1481at 61.435 kb on + strand, within Ac3H11_1481at 61.435 kb on + strand, within Ac3H11_1481at 61.435 kb on + strand, within Ac3H11_1481at 61.435 kb on + strand, within Ac3H11_1481at 61.435 kb on + strand, within Ac3H11_1481at 61.435 kb on + strand, within Ac3H11_1481at 61.435 kb on + strand, within Ac3H11_1481at 61.436 kb on - strand, within Ac3H11_1481at 61.436 kb on - strand, within Ac3H11_1481at 61.436 kb on - strand, within Ac3H11_1481at 61.436 kb on - strand, within Ac3H11_1481at 61.573 kb on + strand, within Ac3H11_1481at 61.574 kb on - strand, within Ac3H11_1481at 61.574 kb on - strand, within Ac3H11_1481at 61.589 kb on - strand, within Ac3H11_1481at 61.666 kb on + strand, within Ac3H11_1481at 61.666 kb on + strand, within Ac3H11_1481at 61.666 kb on + strand, within Ac3H11_1481at 62.028 kb on + strandat 62.028 kb on + strandat 62.028 kb on + strandat 62.029 kb on - strandat 62.029 kb on - strandat 62.029 kb on - strandat 62.029 kb on - strandat 62.029 kb on - strandat 62.029 kb on - strandat 62.029 kb on - strandat 62.029 kb on - strandat 62.050 kb on + strandat 62.130 kb on - strand, within Ac3H11_1482at 62.194 kb on + strand, within Ac3H11_1482at 62.194 kb on + strand, within Ac3H11_1482at 62.459 kb on - strand, within Ac3H11_1482at 62.459 kb on - strand, within Ac3H11_1482at 62.530 kb on + strand, within Ac3H11_1482at 62.531 kb on - strand, within Ac3H11_1482at 62.531 kb on - strand, within Ac3H11_1482at 62.614 kb on + strand, within Ac3H11_1482at 62.614 kb on + strand, within Ac3H11_1482at 62.614 kb on + strand, within Ac3H11_1482at 62.918 kb on + strandat 63.287 kb on + strand, within Ac3H11_1483at 63.287 kb on + strand, within Ac3H11_1483at 63.288 kb on - strand, within Ac3H11_1483at 63.288 kb on - strand, within Ac3H11_1483at 63.402 kb on + strand, within Ac3H11_1483at 63.402 kb on + strand, within Ac3H11_1483at 63.402 kb on + strand, within Ac3H11_1483at 63.403 kb on - strand, within Ac3H11_1483at 63.403 kb on - strand, within Ac3H11_1483at 63.446 kb on + strand, within Ac3H11_1483at 63.447 kb on - strand, within Ac3H11_1483at 63.630 kb on + strandat 63.630 kb on + strandat 63.630 kb on + strandat 63.630 kb on + strandat 63.630 kb on + strandat 63.630 kb on + strandat 63.630 kb on + strandat 63.631 kb on - strandat 63.631 kb on - strandat 63.631 kb on - strandat 63.631 kb on - strandat 63.631 kb on - strandat 63.631 kb on - strandat 63.631 kb on - strandat 63.631 kb on - strandat 63.692 kb on + strandat 63.692 kb on + strandat 63.693 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.005 mg/ml
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61,064 + Ac3H11_1481 0.14 -0.2
61,064 + Ac3H11_1481 0.14 +0.1
61,065 - Ac3H11_1481 0.14 +0.7
61,065 - Ac3H11_1481 0.14 +0.1
61,435 + Ac3H11_1481 0.52 +0.4
61,435 + Ac3H11_1481 0.52 +0.4
61,435 + Ac3H11_1481 0.52 +1.0
61,435 + Ac3H11_1481 0.52 +0.6
61,435 + Ac3H11_1481 0.52 -0.4
61,435 + Ac3H11_1481 0.52 +0.6
61,435 + Ac3H11_1481 0.52 -0.2
61,436 - Ac3H11_1481 0.52 +0.3
61,436 - Ac3H11_1481 0.52 -0.1
61,436 - Ac3H11_1481 0.52 +1.1
61,436 - Ac3H11_1481 0.52 -0.3
61,573 + Ac3H11_1481 0.66 -1.5
61,574 - Ac3H11_1481 0.66 -0.0
61,574 - Ac3H11_1481 0.66 +0.2
61,589 - Ac3H11_1481 0.67 +1.7
61,666 + Ac3H11_1481 0.75 +0.4
61,666 + Ac3H11_1481 0.75 +1.0
61,666 + Ac3H11_1481 0.75 -0.3
62,028 + +1.6
62,028 + -0.2
62,028 + -0.5
62,029 - +0.4
62,029 - +0.3
62,029 - -0.6
62,029 - +0.1
62,029 - -0.2
62,029 - +0.5
62,029 - -0.4
62,029 - +0.3
62,050 + -1.0
62,130 - Ac3H11_1482 0.10 +1.2
62,194 + Ac3H11_1482 0.18 -0.0
62,194 + Ac3H11_1482 0.18 -0.4
62,459 - Ac3H11_1482 0.50 -1.9
62,459 - Ac3H11_1482 0.50 +0.1
62,530 + Ac3H11_1482 0.59 +1.1
62,531 - Ac3H11_1482 0.59 +1.3
62,531 - Ac3H11_1482 0.59 +0.1
62,614 + Ac3H11_1482 0.69 +0.4
62,614 + Ac3H11_1482 0.69 -0.4
62,614 + Ac3H11_1482 0.69 +1.0
62,918 + +0.1
63,287 + Ac3H11_1483 0.54 +0.7
63,287 + Ac3H11_1483 0.54 +0.5
63,288 - Ac3H11_1483 0.54 +0.1
63,288 - Ac3H11_1483 0.54 -0.5
63,402 + Ac3H11_1483 0.69 +0.5
63,402 + Ac3H11_1483 0.69 -0.0
63,402 + Ac3H11_1483 0.69 +1.5
63,403 - Ac3H11_1483 0.70 +1.6
63,403 - Ac3H11_1483 0.70 +0.1
63,446 + Ac3H11_1483 0.75 +0.7
63,447 - Ac3H11_1483 0.75 +0.2
63,630 + +0.5
63,630 + +0.4
63,630 + -0.3
63,630 + +0.1
63,630 + +0.6
63,630 + +0.7
63,630 + -0.4
63,631 - +0.3
63,631 - +0.7
63,631 - +1.5
63,631 - -0.1
63,631 - -0.0
63,631 - +0.1
63,631 - -0.3
63,631 - +0.3
63,692 + -1.7
63,692 + +0.0
63,693 - -0.3

Or see this region's nucleotide sequence