Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23825 and HSERO_RS23830 are separated by 128 nucleotides HSERO_RS23830 and HSERO_RS23835 are separated by 62 nucleotides
HSERO_RS23825: HSERO_RS23825 - hypothetical protein, at 5,459,632 to 5,461,509
_RS23825
HSERO_RS23830: HSERO_RS23830 - transcriptional regulator, at 5,461,638 to 5,462,342
_RS23830
HSERO_RS23835: HSERO_RS23835 - transporter, at 5,462,405 to 5,463,340
_RS23835
Position (kb) 5461
5462
5463 Strain fitness (log2 ratio) -1
0
1 at 5460.639 kb on - strand, within HSERO_RS23825 at 5460.662 kb on + strand, within HSERO_RS23825 at 5460.705 kb on + strand, within HSERO_RS23825 at 5460.724 kb on - strand, within HSERO_RS23825 at 5460.734 kb on + strand, within HSERO_RS23825 at 5460.761 kb on + strand, within HSERO_RS23825 at 5460.942 kb on - strand, within HSERO_RS23825 at 5460.975 kb on + strand, within HSERO_RS23825 at 5460.990 kb on - strand, within HSERO_RS23825 at 5461.133 kb on + strand, within HSERO_RS23825 at 5461.133 kb on + strand, within HSERO_RS23825 at 5461.141 kb on - strand, within HSERO_RS23825 at 5461.257 kb on + strand, within HSERO_RS23825 at 5461.486 kb on - strand at 5461.555 kb on + strand at 5461.662 kb on - strand at 5461.892 kb on + strand, within HSERO_RS23830 at 5461.935 kb on - strand, within HSERO_RS23830 at 5462.101 kb on - strand, within HSERO_RS23830 at 5462.169 kb on - strand, within HSERO_RS23830 at 5462.343 kb on + strand at 5462.393 kb on - strand at 5462.400 kb on + strand at 5462.461 kb on + strand at 5462.504 kb on + strand, within HSERO_RS23835 at 5462.612 kb on + strand, within HSERO_RS23835 at 5462.704 kb on - strand, within HSERO_RS23835 at 5462.751 kb on - strand, within HSERO_RS23835 at 5463.033 kb on + strand, within HSERO_RS23835 at 5463.037 kb on - strand, within HSERO_RS23835 at 5463.043 kb on + strand, within HSERO_RS23835 at 5463.190 kb on + strand, within HSERO_RS23835 at 5463.337 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 5,460,639 - HSERO_RS23825 0.54 +0.3 5,460,662 + HSERO_RS23825 0.55 +0.5 5,460,705 + HSERO_RS23825 0.57 -0.4 5,460,724 - HSERO_RS23825 0.58 +0.3 5,460,734 + HSERO_RS23825 0.59 -0.1 5,460,761 + HSERO_RS23825 0.60 +0.5 5,460,942 - HSERO_RS23825 0.70 -0.2 5,460,975 + HSERO_RS23825 0.72 +0.2 5,460,990 - HSERO_RS23825 0.72 -0.2 5,461,133 + HSERO_RS23825 0.80 -0.9 5,461,133 + HSERO_RS23825 0.80 +0.1 5,461,141 - HSERO_RS23825 0.80 -0.5 5,461,257 + HSERO_RS23825 0.87 +0.1 5,461,486 - -0.1 5,461,555 + +0.0 5,461,662 - -0.0 5,461,892 + HSERO_RS23830 0.36 -0.6 5,461,935 - HSERO_RS23830 0.42 +0.4 5,462,101 - HSERO_RS23830 0.66 +1.2 5,462,169 - HSERO_RS23830 0.75 -0.2 5,462,343 + -0.5 5,462,393 - -0.3 5,462,400 + +0.1 5,462,461 + -0.9 5,462,504 + HSERO_RS23835 0.11 +0.5 5,462,612 + HSERO_RS23835 0.22 +0.2 5,462,704 - HSERO_RS23835 0.32 -1.2 5,462,751 - HSERO_RS23835 0.37 +0.0 5,463,033 + HSERO_RS23835 0.67 -0.3 5,463,037 - HSERO_RS23835 0.68 -0.6 5,463,043 + HSERO_RS23835 0.68 +0.0 5,463,190 + HSERO_RS23835 0.84 +0.4 5,463,337 - -0.5
Or see this region's nucleotide sequence