Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23550 and HSERO_RS23555 are separated by 40 nucleotides HSERO_RS23555 and HSERO_RS23560 are separated by 23 nucleotides HSERO_RS23560 and HSERO_RS23565 are separated by 428 nucleotides
HSERO_RS23550: HSERO_RS23550 - ABC transporter ATP-binding protein, at 5,399,388 to 5,401,055
_RS23550
HSERO_RS23555: HSERO_RS23555 - membrane protein, at 5,401,096 to 5,401,992
_RS23555
HSERO_RS23560: HSERO_RS23560 - MFS transporter, at 5,402,016 to 5,403,236
_RS23560
HSERO_RS23565: HSERO_RS23565 - sugar ABC transporter substrate-binding protein, at 5,403,665 to 5,404,963
_RS23565
Position (kb) 5402
5403
5404 Strain fitness (log2 ratio) -1
0
1
2 at 5401.052 kb on - strand at 5401.063 kb on - strand at 5401.082 kb on + strand at 5401.090 kb on - strand at 5401.179 kb on - strand at 5401.222 kb on + strand, within HSERO_RS23555 at 5401.230 kb on - strand, within HSERO_RS23555 at 5401.240 kb on + strand, within HSERO_RS23555 at 5401.260 kb on + strand, within HSERO_RS23555 at 5401.402 kb on + strand at 5401.409 kb on - strand, within HSERO_RS23555 at 5401.468 kb on - strand, within HSERO_RS23555 at 5401.747 kb on + strand, within HSERO_RS23555 at 5401.755 kb on - strand, within HSERO_RS23555 at 5401.848 kb on + strand, within HSERO_RS23555 at 5401.858 kb on - strand, within HSERO_RS23555 at 5401.925 kb on + strand at 5402.141 kb on - strand, within HSERO_RS23560 at 5402.189 kb on - strand, within HSERO_RS23560 at 5402.401 kb on + strand, within HSERO_RS23560 at 5402.572 kb on - strand, within HSERO_RS23560 at 5402.599 kb on + strand, within HSERO_RS23560 at 5402.599 kb on + strand, within HSERO_RS23560 at 5403.022 kb on - strand, within HSERO_RS23560 at 5403.208 kb on + strand at 5403.262 kb on - strand at 5403.274 kb on - strand at 5403.282 kb on - strand at 5403.503 kb on + strand at 5403.553 kb on + strand at 5403.663 kb on - strand at 5403.710 kb on - strand at 5403.846 kb on + strand, within HSERO_RS23565 at 5403.949 kb on - strand, within HSERO_RS23565 at 5403.954 kb on - strand, within HSERO_RS23565 at 5404.084 kb on + strand, within HSERO_RS23565 at 5404.119 kb on + strand, within HSERO_RS23565 at 5404.162 kb on - strand, within HSERO_RS23565 at 5404.172 kb on - strand, within HSERO_RS23565
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 5,401,052 - -0.6 5,401,063 - -0.0 5,401,082 + -1.1 5,401,090 - +0.3 5,401,179 - -0.2 5,401,222 + HSERO_RS23555 0.14 -0.2 5,401,230 - HSERO_RS23555 0.15 -0.7 5,401,240 + HSERO_RS23555 0.16 -0.3 5,401,260 + HSERO_RS23555 0.18 -0.2 5,401,402 + +2.3 5,401,409 - HSERO_RS23555 0.35 +0.2 5,401,468 - HSERO_RS23555 0.41 +0.4 5,401,747 + HSERO_RS23555 0.73 -0.5 5,401,755 - HSERO_RS23555 0.73 -0.1 5,401,848 + HSERO_RS23555 0.84 +0.3 5,401,858 - HSERO_RS23555 0.85 -0.1 5,401,925 + -1.0 5,402,141 - HSERO_RS23560 0.10 +0.9 5,402,189 - HSERO_RS23560 0.14 +0.8 5,402,401 + HSERO_RS23560 0.32 +1.0 5,402,572 - HSERO_RS23560 0.46 +0.8 5,402,599 + HSERO_RS23560 0.48 -0.3 5,402,599 + HSERO_RS23560 0.48 +0.6 5,403,022 - HSERO_RS23560 0.82 +0.0 5,403,208 + +0.4 5,403,262 - +1.0 5,403,274 - -0.6 5,403,282 - +0.2 5,403,503 + -0.4 5,403,553 + +0.1 5,403,663 - +0.2 5,403,710 - +0.5 5,403,846 + HSERO_RS23565 0.14 +0.5 5,403,949 - HSERO_RS23565 0.22 -0.3 5,403,954 - HSERO_RS23565 0.22 -0.0 5,404,084 + HSERO_RS23565 0.32 +0.1 5,404,119 + HSERO_RS23565 0.35 -0.1 5,404,162 - HSERO_RS23565 0.38 +0.2 5,404,172 - HSERO_RS23565 0.39 -1.4
Or see this region's nucleotide sequence