Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23415 and HSERO_RS23420 are separated by 183 nucleotides HSERO_RS23420 and HSERO_RS23425 are separated by 118 nucleotides
HSERO_RS23415: HSERO_RS23415 - hypothetical protein, at 5,372,582 to 5,373,439
_RS23415
HSERO_RS23420: HSERO_RS23420 - hypothetical protein, at 5,373,623 to 5,374,123
_RS23420
HSERO_RS23425: HSERO_RS23425 - membrane protein, at 5,374,242 to 5,375,210
_RS23425
Position (kb) 5373
5374
5375 Strain fitness (log2 ratio) -1
0
1
2 at 5372.864 kb on - strand, within HSERO_RS23415 at 5372.931 kb on - strand, within HSERO_RS23415 at 5372.931 kb on - strand, within HSERO_RS23415 at 5373.009 kb on - strand, within HSERO_RS23415 at 5373.079 kb on - strand, within HSERO_RS23415 at 5373.079 kb on - strand, within HSERO_RS23415 at 5373.300 kb on - strand, within HSERO_RS23415 at 5373.379 kb on - strand at 5373.505 kb on + strand at 5373.658 kb on - strand at 5373.670 kb on + strand at 5373.697 kb on - strand, within HSERO_RS23420 at 5373.722 kb on - strand, within HSERO_RS23420 at 5373.875 kb on + strand, within HSERO_RS23420 at 5373.991 kb on - strand, within HSERO_RS23420 at 5374.037 kb on + strand at 5374.062 kb on + strand, within HSERO_RS23420 at 5374.070 kb on - strand, within HSERO_RS23420 at 5374.175 kb on - strand at 5374.418 kb on + strand, within HSERO_RS23425 at 5374.426 kb on - strand, within HSERO_RS23425 at 5374.535 kb on + strand, within HSERO_RS23425 at 5374.643 kb on + strand, within HSERO_RS23425 at 5374.656 kb on + strand, within HSERO_RS23425 at 5374.656 kb on + strand, within HSERO_RS23425 at 5374.670 kb on + strand, within HSERO_RS23425 at 5374.730 kb on + strand, within HSERO_RS23425 at 5374.771 kb on + strand, within HSERO_RS23425 at 5374.794 kb on + strand, within HSERO_RS23425 at 5374.872 kb on + strand, within HSERO_RS23425 at 5374.872 kb on + strand, within HSERO_RS23425 at 5374.919 kb on + strand, within HSERO_RS23425 at 5374.946 kb on + strand, within HSERO_RS23425 at 5374.954 kb on - strand, within HSERO_RS23425 at 5374.960 kb on - strand, within HSERO_RS23425 at 5375.050 kb on + strand, within HSERO_RS23425
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 5,372,864 - HSERO_RS23415 0.33 +0.0 5,372,931 - HSERO_RS23415 0.41 -1.6 5,372,931 - HSERO_RS23415 0.41 -0.2 5,373,009 - HSERO_RS23415 0.50 -0.3 5,373,079 - HSERO_RS23415 0.58 -0.5 5,373,079 - HSERO_RS23415 0.58 +0.2 5,373,300 - HSERO_RS23415 0.84 -0.3 5,373,379 - -0.2 5,373,505 + +0.1 5,373,658 - -0.0 5,373,670 + +0.9 5,373,697 - HSERO_RS23420 0.15 +0.5 5,373,722 - HSERO_RS23420 0.20 +0.2 5,373,875 + HSERO_RS23420 0.50 +0.1 5,373,991 - HSERO_RS23420 0.73 +0.3 5,374,037 + +1.3 5,374,062 + HSERO_RS23420 0.88 +0.5 5,374,070 - HSERO_RS23420 0.89 +0.4 5,374,175 - +0.4 5,374,418 + HSERO_RS23425 0.18 -1.3 5,374,426 - HSERO_RS23425 0.19 -0.1 5,374,535 + HSERO_RS23425 0.30 -0.5 5,374,643 + HSERO_RS23425 0.41 -0.2 5,374,656 + HSERO_RS23425 0.43 -0.9 5,374,656 + HSERO_RS23425 0.43 -0.4 5,374,670 + HSERO_RS23425 0.44 -0.4 5,374,730 + HSERO_RS23425 0.50 +0.3 5,374,771 + HSERO_RS23425 0.55 +0.1 5,374,794 + HSERO_RS23425 0.57 -0.9 5,374,872 + HSERO_RS23425 0.65 -0.2 5,374,872 + HSERO_RS23425 0.65 -0.7 5,374,919 + HSERO_RS23425 0.70 +0.5 5,374,946 + HSERO_RS23425 0.73 -0.0 5,374,954 - HSERO_RS23425 0.73 -0.2 5,374,960 - HSERO_RS23425 0.74 +1.0 5,375,050 + HSERO_RS23425 0.83 +1.8
Or see this region's nucleotide sequence