Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23185 and HSERO_RS23190 are separated by 13 nucleotides HSERO_RS23190 and HSERO_RS23195 are separated by 271 nucleotides HSERO_RS23195 and HSERO_RS23200 are separated by 3 nucleotides
HSERO_RS23185: HSERO_RS23185 - succinyl-CoA:3-ketoacid-CoA transferase, at 5,320,979 to 5,321,629
_RS23185
HSERO_RS23190: HSERO_RS23190 - succinyl-CoA:3-ketoacid-CoA transferase, at 5,321,643 to 5,322,338
_RS23190
HSERO_RS23195: HSERO_RS23195 - LuxR family transcriptional regulator, at 5,322,610 to 5,323,170
_RS23195
HSERO_RS23200: HSERO_RS23200 - LysR family transcriptional regulator, at 5,323,174 to 5,324,100
_RS23200
Position (kb) 5322
5323
5324 Strain fitness (log2 ratio) -1
0
1 at 5322.445 kb on - strand at 5322.747 kb on + strand, within HSERO_RS23195 at 5322.920 kb on - strand, within HSERO_RS23195 at 5323.130 kb on + strand at 5323.268 kb on + strand, within HSERO_RS23200 at 5323.376 kb on - strand, within HSERO_RS23200 at 5323.380 kb on - strand, within HSERO_RS23200 at 5323.515 kb on + strand, within HSERO_RS23200 at 5323.515 kb on + strand, within HSERO_RS23200 at 5323.525 kb on - strand, within HSERO_RS23200 at 5323.572 kb on + strand, within HSERO_RS23200 at 5323.634 kb on + strand, within HSERO_RS23200 at 5323.652 kb on - strand, within HSERO_RS23200 at 5323.675 kb on + strand, within HSERO_RS23200 at 5323.816 kb on + strand, within HSERO_RS23200 at 5323.856 kb on - strand, within HSERO_RS23200 at 5324.140 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 5,322,445 - +0.3 5,322,747 + HSERO_RS23195 0.24 +0.6 5,322,920 - HSERO_RS23195 0.55 +0.0 5,323,130 + +0.1 5,323,268 + HSERO_RS23200 0.10 -0.4 5,323,376 - HSERO_RS23200 0.22 -0.5 5,323,380 - HSERO_RS23200 0.22 -0.2 5,323,515 + HSERO_RS23200 0.37 +0.7 5,323,515 + HSERO_RS23200 0.37 +1.0 5,323,525 - HSERO_RS23200 0.38 +0.0 5,323,572 + HSERO_RS23200 0.43 +0.1 5,323,634 + HSERO_RS23200 0.50 -0.1 5,323,652 - HSERO_RS23200 0.52 -0.5 5,323,675 + HSERO_RS23200 0.54 -0.0 5,323,816 + HSERO_RS23200 0.69 -0.1 5,323,856 - HSERO_RS23200 0.74 -1.2 5,324,140 + +0.1
Or see this region's nucleotide sequence