Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23140 and HSERO_RS23145 are separated by 256 nucleotides HSERO_RS23145 and HSERO_RS23150 are separated by 19 nucleotides HSERO_RS23150 and HSERO_RS23155 are separated by 117 nucleotides HSERO_RS23155 and HSERO_RS23160 are separated by 61 nucleotides
HSERO_RS23140: HSERO_RS23140 - hypothetical protein, at 5,311,186 to 5,311,908
_RS23140
HSERO_RS23145: HSERO_RS23145 - multidrug transporter, at 5,312,165 to 5,312,497
_RS23145
HSERO_RS23150: HSERO_RS23150 - AraC family transcriptional regulator, at 5,312,517 to 5,313,458
_RS23150
HSERO_RS23155: HSERO_RS23155 - AraC family transcriptional regulator, at 5,313,576 to 5,314,388
_RS23155
HSERO_RS23160: HSERO_RS23160 - short-chain dehydrogenase, at 5,314,450 to 5,315,208
_RS23160
Position (kb) 5312
5313
5314 Strain fitness (log2 ratio) -1
0
1 at 5311.522 kb on - strand, within HSERO_RS23140 at 5311.559 kb on + strand, within HSERO_RS23140 at 5311.618 kb on + strand, within HSERO_RS23140 at 5311.733 kb on - strand, within HSERO_RS23140 at 5311.785 kb on - strand, within HSERO_RS23140 at 5311.806 kb on + strand, within HSERO_RS23140 at 5311.826 kb on + strand, within HSERO_RS23140 at 5311.838 kb on + strand at 5311.853 kb on + strand at 5311.903 kb on + strand at 5311.916 kb on + strand at 5311.916 kb on + strand at 5311.923 kb on + strand at 5311.960 kb on - strand at 5312.114 kb on - strand at 5312.144 kb on - strand at 5312.201 kb on + strand, within HSERO_RS23145 at 5312.352 kb on + strand, within HSERO_RS23145 at 5312.360 kb on - strand, within HSERO_RS23145 at 5312.448 kb on + strand, within HSERO_RS23145 at 5312.492 kb on + strand at 5312.555 kb on + strand at 5312.555 kb on + strand at 5312.563 kb on - strand at 5312.708 kb on - strand, within HSERO_RS23150 at 5312.819 kb on - strand, within HSERO_RS23150 at 5313.062 kb on + strand, within HSERO_RS23150 at 5313.087 kb on + strand, within HSERO_RS23150 at 5313.203 kb on + strand, within HSERO_RS23150 at 5313.534 kb on + strand at 5313.584 kb on + strand at 5313.610 kb on - strand at 5314.027 kb on + strand, within HSERO_RS23155 at 5314.132 kb on - strand, within HSERO_RS23155 at 5314.387 kb on + strand at 5314.423 kb on - strand at 5314.431 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 5,311,522 - HSERO_RS23140 0.46 -0.5 5,311,559 + HSERO_RS23140 0.52 +0.3 5,311,618 + HSERO_RS23140 0.60 +0.1 5,311,733 - HSERO_RS23140 0.76 -0.3 5,311,785 - HSERO_RS23140 0.83 -0.1 5,311,806 + HSERO_RS23140 0.86 +0.2 5,311,826 + HSERO_RS23140 0.89 -0.5 5,311,838 + -0.4 5,311,853 + +0.1 5,311,903 + -0.9 5,311,916 + +0.8 5,311,916 + -0.1 5,311,923 + +0.6 5,311,960 - +0.2 5,312,114 - +0.1 5,312,144 - +0.3 5,312,201 + HSERO_RS23145 0.11 -0.1 5,312,352 + HSERO_RS23145 0.56 -0.2 5,312,360 - HSERO_RS23145 0.59 -0.7 5,312,448 + HSERO_RS23145 0.85 +1.0 5,312,492 + +1.3 5,312,555 + -0.0 5,312,555 + -0.5 5,312,563 - -0.4 5,312,708 - HSERO_RS23150 0.20 +1.7 5,312,819 - HSERO_RS23150 0.32 +0.8 5,313,062 + HSERO_RS23150 0.58 +0.3 5,313,087 + HSERO_RS23150 0.61 -0.2 5,313,203 + HSERO_RS23150 0.73 +0.5 5,313,534 + -0.3 5,313,584 + -0.1 5,313,610 - +0.4 5,314,027 + HSERO_RS23155 0.55 +0.4 5,314,132 - HSERO_RS23155 0.68 -1.5 5,314,387 + -1.1 5,314,423 - +0.4 5,314,431 - -0.6
Or see this region's nucleotide sequence