Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23065 and HSERO_RS23070 are separated by 47 nucleotides HSERO_RS23070 and HSERO_RS23075 are separated by 466 nucleotides
HSERO_RS23065: HSERO_RS23065 - psensor histidine kinase, at 5,293,532 to 5,294,959
_RS23065
HSERO_RS23070: HSERO_RS23070 - transcriptional regulator, at 5,295,007 to 5,295,690
_RS23070
HSERO_RS23075: HSERO_RS23075 - methyl-accepting chemotaxis protein, at 5,296,157 to 5,297,707
_RS23075
Position (kb) 5295
5296 Strain fitness (log2 ratio) -1
0
1 at 5294.021 kb on - strand, within HSERO_RS23065 at 5294.030 kb on + strand, within HSERO_RS23065 at 5294.139 kb on - strand at 5294.650 kb on + strand, within HSERO_RS23065 at 5294.650 kb on + strand, within HSERO_RS23065 at 5294.690 kb on + strand, within HSERO_RS23065 at 5294.786 kb on - strand, within HSERO_RS23065 at 5294.822 kb on + strand at 5295.106 kb on + strand, within HSERO_RS23070 at 5295.160 kb on - strand, within HSERO_RS23070 at 5295.222 kb on + strand, within HSERO_RS23070 at 5295.451 kb on - strand, within HSERO_RS23070 at 5295.481 kb on + strand, within HSERO_RS23070 at 5295.481 kb on + strand, within HSERO_RS23070 at 5295.661 kb on + strand at 5295.828 kb on - strand at 5295.828 kb on - strand at 5295.872 kb on + strand at 5295.895 kb on + strand at 5296.087 kb on + strand at 5296.107 kb on + strand at 5296.115 kb on - strand at 5296.115 kb on - strand at 5296.131 kb on + strand at 5296.239 kb on + strand at 5296.351 kb on + strand, within HSERO_RS23075 at 5296.510 kb on + strand, within HSERO_RS23075 at 5296.518 kb on - strand, within HSERO_RS23075 at 5296.533 kb on - strand, within HSERO_RS23075 at 5296.660 kb on + strand, within HSERO_RS23075
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 5,294,021 - HSERO_RS23065 0.34 +0.0 5,294,030 + HSERO_RS23065 0.35 +0.1 5,294,139 - -0.6 5,294,650 + HSERO_RS23065 0.78 +0.8 5,294,650 + HSERO_RS23065 0.78 -0.4 5,294,690 + HSERO_RS23065 0.81 -0.1 5,294,786 - HSERO_RS23065 0.88 -0.2 5,294,822 + -1.3 5,295,106 + HSERO_RS23070 0.14 +0.3 5,295,160 - HSERO_RS23070 0.22 +1.1 5,295,222 + HSERO_RS23070 0.31 +0.4 5,295,451 - HSERO_RS23070 0.65 +0.3 5,295,481 + HSERO_RS23070 0.69 +0.0 5,295,481 + HSERO_RS23070 0.69 +0.6 5,295,661 + +0.1 5,295,828 - -0.1 5,295,828 - -0.5 5,295,872 + -0.5 5,295,895 + +0.8 5,296,087 + +0.1 5,296,107 + +0.1 5,296,115 - -0.1 5,296,115 - -0.8 5,296,131 + -0.5 5,296,239 + +0.3 5,296,351 + HSERO_RS23075 0.13 -0.1 5,296,510 + HSERO_RS23075 0.23 -0.0 5,296,518 - HSERO_RS23075 0.23 +0.9 5,296,533 - HSERO_RS23075 0.24 -0.1 5,296,660 + HSERO_RS23075 0.32 -0.5
Or see this region's nucleotide sequence