Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22870 and HSERO_RS22875 are separated by 30 nucleotides HSERO_RS22875 and HSERO_RS22880 are separated by 200 nucleotides HSERO_RS22880 and HSERO_RS22885 are separated by 110 nucleotides
HSERO_RS22870: HSERO_RS22870 - nicotinate phosphoribosyltransferase, at 5,249,460 to 5,250,662
_RS22870
HSERO_RS22875: HSERO_RS22875 - cysteine hydrolase, at 5,250,693 to 5,251,556
_RS22875
HSERO_RS22880: HSERO_RS22880 - NUDIX hydrolase, at 5,251,757 to 5,252,422
_RS22880
HSERO_RS22885: HSERO_RS22885 - hypothetical protein, at 5,252,533 to 5,252,757
_RS22885
Position (kb) 5250
5251
5252 Strain fitness (log2 ratio) -1
0
1
2
3 at 5249.708 kb on + strand, within HSERO_RS22870 at 5249.800 kb on - strand, within HSERO_RS22870 at 5249.911 kb on + strand, within HSERO_RS22870 at 5249.984 kb on - strand, within HSERO_RS22870 at 5250.050 kb on + strand, within HSERO_RS22870 at 5250.058 kb on - strand, within HSERO_RS22870 at 5250.058 kb on - strand, within HSERO_RS22870 at 5250.208 kb on + strand, within HSERO_RS22870 at 5250.351 kb on - strand, within HSERO_RS22870 at 5250.451 kb on - strand, within HSERO_RS22870 at 5250.481 kb on + strand, within HSERO_RS22870 at 5250.563 kb on - strand at 5250.691 kb on + strand at 5250.691 kb on + strand at 5250.915 kb on + strand, within HSERO_RS22875 at 5251.009 kb on + strand, within HSERO_RS22875 at 5251.047 kb on - strand, within HSERO_RS22875 at 5251.067 kb on + strand, within HSERO_RS22875 at 5251.086 kb on + strand, within HSERO_RS22875 at 5251.086 kb on + strand, within HSERO_RS22875 at 5251.150 kb on + strand, within HSERO_RS22875 at 5251.165 kb on - strand, within HSERO_RS22875 at 5251.195 kb on + strand, within HSERO_RS22875 at 5251.264 kb on + strand, within HSERO_RS22875 at 5251.332 kb on + strand, within HSERO_RS22875 at 5251.344 kb on - strand, within HSERO_RS22875 at 5251.606 kb on - strand at 5251.676 kb on + strand at 5251.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 5,249,708 + HSERO_RS22870 0.21 -0.0 5,249,800 - HSERO_RS22870 0.28 +0.9 5,249,911 + HSERO_RS22870 0.37 -0.5 5,249,984 - HSERO_RS22870 0.44 -0.6 5,250,050 + HSERO_RS22870 0.49 +0.1 5,250,058 - HSERO_RS22870 0.50 -0.1 5,250,058 - HSERO_RS22870 0.50 -0.4 5,250,208 + HSERO_RS22870 0.62 -0.5 5,250,351 - HSERO_RS22870 0.74 +0.7 5,250,451 - HSERO_RS22870 0.82 -0.0 5,250,481 + HSERO_RS22870 0.85 +0.0 5,250,563 - -0.2 5,250,691 + +3.0 5,250,691 + +0.0 5,250,915 + HSERO_RS22875 0.26 -0.4 5,251,009 + HSERO_RS22875 0.37 +0.5 5,251,047 - HSERO_RS22875 0.41 +0.2 5,251,067 + HSERO_RS22875 0.43 +0.8 5,251,086 + HSERO_RS22875 0.45 +0.6 5,251,086 + HSERO_RS22875 0.45 +0.1 5,251,150 + HSERO_RS22875 0.53 -0.0 5,251,165 - HSERO_RS22875 0.55 +0.4 5,251,195 + HSERO_RS22875 0.58 +0.9 5,251,264 + HSERO_RS22875 0.66 +0.1 5,251,332 + HSERO_RS22875 0.74 +0.5 5,251,344 - HSERO_RS22875 0.75 -0.2 5,251,606 - -0.7 5,251,676 + +0.2 5,251,741 - +0.4
Or see this region's nucleotide sequence