Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22570 and HSERO_RS22575 are separated by 2 nucleotides HSERO_RS22575 and HSERO_RS22580 are separated by 136 nucleotides HSERO_RS22580 and HSERO_RS22585 are separated by 13 nucleotides
HSERO_RS22570: HSERO_RS22570 - DNA-binding protein, at 5,176,708 to 5,177,241
_RS22570
HSERO_RS22575: HSERO_RS22575 - arylesterase, at 5,177,244 to 5,178,071
_RS22575
HSERO_RS22580: HSERO_RS22580 - LysR family transcriptional regulator, at 5,178,208 to 5,178,630
_RS22580
HSERO_RS22585: HSERO_RS22585 - amidohydrolase, at 5,178,644 to 5,180,527
_RS22585
Position (kb) 5178
5179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5177.257 kb on - strand at 5177.280 kb on - strand at 5177.345 kb on + strand, within HSERO_RS22575 at 5177.381 kb on - strand, within HSERO_RS22575 at 5177.417 kb on - strand, within HSERO_RS22575 at 5177.471 kb on - strand, within HSERO_RS22575 at 5177.496 kb on - strand, within HSERO_RS22575 at 5177.537 kb on + strand, within HSERO_RS22575 at 5177.612 kb on - strand, within HSERO_RS22575 at 5177.620 kb on + strand, within HSERO_RS22575 at 5177.909 kb on + strand, within HSERO_RS22575 at 5177.917 kb on - strand, within HSERO_RS22575 at 5178.066 kb on + strand at 5178.211 kb on + strand at 5178.341 kb on + strand, within HSERO_RS22580 at 5178.471 kb on - strand, within HSERO_RS22580 at 5178.510 kb on - strand, within HSERO_RS22580 at 5178.535 kb on - strand, within HSERO_RS22580 at 5178.914 kb on - strand, within HSERO_RS22585 at 5178.960 kb on - strand, within HSERO_RS22585 at 5179.043 kb on - strand, within HSERO_RS22585 at 5179.124 kb on - strand, within HSERO_RS22585 at 5179.158 kb on + strand, within HSERO_RS22585 at 5179.163 kb on + strand, within HSERO_RS22585 at 5179.163 kb on + strand, within HSERO_RS22585 at 5179.166 kb on - strand, within HSERO_RS22585 at 5179.166 kb on - strand, within HSERO_RS22585 at 5179.173 kb on + strand, within HSERO_RS22585 at 5179.173 kb on + strand, within HSERO_RS22585 at 5179.173 kb on + strand, within HSERO_RS22585 at 5179.188 kb on - strand at 5179.474 kb on + strand, within HSERO_RS22585
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 5,177,257 - +0.3 5,177,280 - -0.6 5,177,345 + HSERO_RS22575 0.12 +0.3 5,177,381 - HSERO_RS22575 0.17 +1.8 5,177,417 - HSERO_RS22575 0.21 +1.2 5,177,471 - HSERO_RS22575 0.27 -0.0 5,177,496 - HSERO_RS22575 0.30 +1.6 5,177,537 + HSERO_RS22575 0.35 -0.0 5,177,612 - HSERO_RS22575 0.44 -0.7 5,177,620 + HSERO_RS22575 0.45 -0.1 5,177,909 + HSERO_RS22575 0.80 +0.4 5,177,917 - HSERO_RS22575 0.81 +0.1 5,178,066 + +0.0 5,178,211 + +0.4 5,178,341 + HSERO_RS22580 0.31 +0.1 5,178,471 - HSERO_RS22580 0.62 +0.9 5,178,510 - HSERO_RS22580 0.71 -0.4 5,178,535 - HSERO_RS22580 0.77 +0.8 5,178,914 - HSERO_RS22585 0.14 +0.8 5,178,960 - HSERO_RS22585 0.17 +0.0 5,179,043 - HSERO_RS22585 0.21 +0.3 5,179,124 - HSERO_RS22585 0.25 +0.6 5,179,158 + HSERO_RS22585 0.27 -0.4 5,179,163 + HSERO_RS22585 0.28 -0.6 5,179,163 + HSERO_RS22585 0.28 -0.1 5,179,166 - HSERO_RS22585 0.28 +0.4 5,179,166 - HSERO_RS22585 0.28 +0.5 5,179,173 + HSERO_RS22585 0.28 -0.4 5,179,173 + HSERO_RS22585 0.28 -0.1 5,179,173 + HSERO_RS22585 0.28 -0.4 5,179,188 - -2.8 5,179,474 + HSERO_RS22585 0.44 +0.1
Or see this region's nucleotide sequence