Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22095 and HSERO_RS22100 are separated by 652 nucleotides HSERO_RS22100 and HSERO_RS22105 overlap by 4 nucleotides
HSERO_RS22095: HSERO_RS22095 - hypothetical protein, at 5,049,861 to 5,050,388
_RS22095
HSERO_RS22100: HSERO_RS22100 - hypothetical protein, at 5,051,041 to 5,052,012
_RS22100
HSERO_RS22105: HSERO_RS22105 - glycosyl transferase, at 5,052,009 to 5,053,058
_RS22105
Position (kb) 5051
5052
5053 Strain fitness (log2 ratio) -1
0
1 at 5050.116 kb on - strand, within HSERO_RS22095 at 5050.160 kb on + strand at 5050.222 kb on + strand, within HSERO_RS22095 at 5050.369 kb on - strand at 5050.408 kb on - strand at 5050.438 kb on - strand at 5050.528 kb on - strand at 5051.029 kb on + strand at 5051.037 kb on - strand at 5051.042 kb on - strand at 5051.183 kb on - strand, within HSERO_RS22100 at 5051.285 kb on + strand, within HSERO_RS22100 at 5051.293 kb on - strand, within HSERO_RS22100 at 5051.349 kb on - strand, within HSERO_RS22100 at 5051.430 kb on - strand, within HSERO_RS22100 at 5051.470 kb on + strand, within HSERO_RS22100 at 5051.514 kb on - strand, within HSERO_RS22100 at 5051.521 kb on - strand, within HSERO_RS22100 at 5051.637 kb on - strand, within HSERO_RS22100 at 5051.772 kb on - strand, within HSERO_RS22100 at 5051.816 kb on + strand, within HSERO_RS22100 at 5051.843 kb on + strand, within HSERO_RS22100 at 5051.866 kb on - strand, within HSERO_RS22100 at 5051.866 kb on - strand, within HSERO_RS22100 at 5051.868 kb on + strand, within HSERO_RS22100 at 5051.932 kb on - strand at 5051.934 kb on + strand at 5051.973 kb on - strand at 5052.049 kb on + strand at 5052.332 kb on + strand, within HSERO_RS22105 at 5052.332 kb on + strand, within HSERO_RS22105 at 5052.506 kb on - strand, within HSERO_RS22105 at 5052.545 kb on + strand, within HSERO_RS22105 at 5052.545 kb on + strand, within HSERO_RS22105 at 5052.553 kb on - strand at 5052.594 kb on - strand, within HSERO_RS22105 at 5052.668 kb on - strand, within HSERO_RS22105 at 5052.683 kb on - strand, within HSERO_RS22105 at 5052.726 kb on + strand, within HSERO_RS22105 at 5052.748 kb on + strand, within HSERO_RS22105 at 5052.764 kb on + strand, within HSERO_RS22105 at 5052.774 kb on + strand, within HSERO_RS22105 at 5052.860 kb on - strand, within HSERO_RS22105 at 5052.866 kb on + strand, within HSERO_RS22105 at 5052.980 kb on - strand at 5053.007 kb on - strand at 5053.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 5,050,116 - HSERO_RS22095 0.48 -0.0 5,050,160 + -0.0 5,050,222 + HSERO_RS22095 0.68 +0.3 5,050,369 - +0.1 5,050,408 - +0.0 5,050,438 - +0.1 5,050,528 - -0.2 5,051,029 + -0.2 5,051,037 - -0.5 5,051,042 - -0.7 5,051,183 - HSERO_RS22100 0.15 +0.0 5,051,285 + HSERO_RS22100 0.25 +1.0 5,051,293 - HSERO_RS22100 0.26 +0.0 5,051,349 - HSERO_RS22100 0.32 -0.1 5,051,430 - HSERO_RS22100 0.40 +0.8 5,051,470 + HSERO_RS22100 0.44 +1.7 5,051,514 - HSERO_RS22100 0.49 -0.0 5,051,521 - HSERO_RS22100 0.49 +0.0 5,051,637 - HSERO_RS22100 0.61 -0.1 5,051,772 - HSERO_RS22100 0.75 +0.5 5,051,816 + HSERO_RS22100 0.80 -0.0 5,051,843 + HSERO_RS22100 0.83 +0.7 5,051,866 - HSERO_RS22100 0.85 +0.2 5,051,866 - HSERO_RS22100 0.85 -0.1 5,051,868 + HSERO_RS22100 0.85 +0.2 5,051,932 - +0.1 5,051,934 + +0.1 5,051,973 - -0.0 5,052,049 + +0.1 5,052,332 + HSERO_RS22105 0.31 -0.0 5,052,332 + HSERO_RS22105 0.31 -0.7 5,052,506 - HSERO_RS22105 0.47 +1.0 5,052,545 + HSERO_RS22105 0.51 +0.4 5,052,545 + HSERO_RS22105 0.51 -0.3 5,052,553 - -0.0 5,052,594 - HSERO_RS22105 0.56 -0.2 5,052,668 - HSERO_RS22105 0.63 +0.1 5,052,683 - HSERO_RS22105 0.64 -0.8 5,052,726 + HSERO_RS22105 0.68 +0.5 5,052,748 + HSERO_RS22105 0.70 -0.1 5,052,764 + HSERO_RS22105 0.72 +0.2 5,052,774 + HSERO_RS22105 0.73 +1.2 5,052,860 - HSERO_RS22105 0.81 -0.6 5,052,866 + HSERO_RS22105 0.82 +0.8 5,052,980 - -0.0 5,053,007 - -0.5 5,053,007 - +0.3
Or see this region's nucleotide sequence