Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19270 and HSERO_RS19275 are separated by 152 nucleotides HSERO_RS19275 and HSERO_RS19280 are separated by 122 nucleotides HSERO_RS19280 and HSERO_RS19285 are separated by 85 nucleotides
HSERO_RS19270: HSERO_RS19270 - metal ABC transporter permease, at 4,418,799 to 4,420,703
_RS19270
HSERO_RS19275: HSERO_RS19275 - acyl-CoA hydrolase, at 4,420,856 to 4,421,290
_RS19275
HSERO_RS19280: HSERO_RS19280 - D-2-hydroxyacid dehydrogenase, at 4,421,413 to 4,422,363
_RS19280
HSERO_RS19285: HSERO_RS19285 - long-chain fatty acid--CoA ligase, at 4,422,449 to 4,424,149
_RS19285
Position (kb) 4421
4422
4423 Strain fitness (log2 ratio) -2
-1
0
1 at 4420.529 kb on - strand at 4420.713 kb on - strand at 4421.094 kb on - strand, within HSERO_RS19275 at 4421.117 kb on + strand, within HSERO_RS19275 at 4421.141 kb on - strand, within HSERO_RS19275 at 4421.143 kb on - strand, within HSERO_RS19275 at 4421.285 kb on - strand at 4421.495 kb on - strand at 4421.495 kb on - strand at 4421.591 kb on - strand, within HSERO_RS19280 at 4421.650 kb on + strand, within HSERO_RS19280 at 4421.688 kb on - strand, within HSERO_RS19280 at 4421.716 kb on - strand, within HSERO_RS19280 at 4421.950 kb on + strand, within HSERO_RS19280 at 4421.962 kb on + strand, within HSERO_RS19280 at 4421.970 kb on - strand, within HSERO_RS19280 at 4422.062 kb on - strand, within HSERO_RS19280 at 4422.062 kb on - strand, within HSERO_RS19280 at 4422.116 kb on + strand, within HSERO_RS19280 at 4422.357 kb on + strand at 4422.360 kb on - strand at 4422.461 kb on + strand at 4422.580 kb on + strand at 4422.651 kb on - strand, within HSERO_RS19285 at 4422.723 kb on + strand, within HSERO_RS19285 at 4423.043 kb on + strand, within HSERO_RS19285 at 4423.216 kb on + strand, within HSERO_RS19285 at 4423.242 kb on + strand, within HSERO_RS19285 at 4423.356 kb on + strand, within HSERO_RS19285
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 4,420,529 - -1.8 4,420,713 - -0.3 4,421,094 - HSERO_RS19275 0.55 +0.7 4,421,117 + HSERO_RS19275 0.60 -0.5 4,421,141 - HSERO_RS19275 0.66 +0.3 4,421,143 - HSERO_RS19275 0.66 -0.3 4,421,285 - -0.2 4,421,495 - +0.7 4,421,495 - -0.7 4,421,591 - HSERO_RS19280 0.19 +1.7 4,421,650 + HSERO_RS19280 0.25 +0.9 4,421,688 - HSERO_RS19280 0.29 +0.4 4,421,716 - HSERO_RS19280 0.32 -0.1 4,421,950 + HSERO_RS19280 0.56 +0.4 4,421,962 + HSERO_RS19280 0.58 -0.5 4,421,970 - HSERO_RS19280 0.59 +0.2 4,422,062 - HSERO_RS19280 0.68 -1.6 4,422,062 - HSERO_RS19280 0.68 +1.4 4,422,116 + HSERO_RS19280 0.74 -0.2 4,422,357 + -0.4 4,422,360 - +0.5 4,422,461 + -0.1 4,422,580 + +0.4 4,422,651 - HSERO_RS19285 0.12 -1.0 4,422,723 + HSERO_RS19285 0.16 +0.4 4,423,043 + HSERO_RS19285 0.35 +0.4 4,423,216 + HSERO_RS19285 0.45 -0.4 4,423,242 + HSERO_RS19285 0.47 -0.9 4,423,356 + HSERO_RS19285 0.53 -0.9
Or see this region's nucleotide sequence