Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19200 and HSERO_RS19205 are separated by 9 nucleotides HSERO_RS19205 and HSERO_RS19210 are separated by 23 nucleotides HSERO_RS19210 and HSERO_RS19215 are separated by 257 nucleotides HSERO_RS19215 and HSERO_RS19220 are separated by 9 nucleotides
HSERO_RS19200: HSERO_RS19200 - cell shape determination protein CcmA, at 4,405,440 to 4,405,835
_RS19200
HSERO_RS19205: HSERO_RS19205 - hypothetical protein, at 4,405,845 to 4,406,555
_RS19205
HSERO_RS19210: HSERO_RS19210 - N-acetyl-gamma-glutamyl-phosphate reductase, at 4,406,579 to 4,407,616
_RS19210
HSERO_RS19215: HSERO_RS19215 - 30S ribosomal protein S9, at 4,407,874 to 4,408,266
_RS19215
HSERO_RS19220: HSERO_RS19220 - 50S ribosomal protein L13, at 4,408,276 to 4,408,704
_RS19220
Position (kb) 4406
4407
4408 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4405.612 kb on - strand at 4405.862 kb on + strand at 4405.899 kb on - strand at 4405.909 kb on - strand at 4405.941 kb on + strand, within HSERO_RS19205 at 4406.146 kb on + strand, within HSERO_RS19205 at 4406.274 kb on + strand, within HSERO_RS19205 at 4406.446 kb on - strand, within HSERO_RS19205 at 4406.493 kb on - strand at 4406.777 kb on - strand, within HSERO_RS19210 at 4407.057 kb on + strand, within HSERO_RS19210 at 4407.058 kb on - strand, within HSERO_RS19210 at 4407.060 kb on - strand, within HSERO_RS19210 at 4407.126 kb on + strand, within HSERO_RS19210 at 4407.134 kb on - strand, within HSERO_RS19210 at 4407.251 kb on - strand, within HSERO_RS19210 at 4407.616 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 4,405,612 - -0.0 4,405,862 + -0.3 4,405,899 - -0.5 4,405,909 - +0.0 4,405,941 + HSERO_RS19205 0.14 -0.4 4,406,146 + HSERO_RS19205 0.42 -1.9 4,406,274 + HSERO_RS19205 0.60 -0.9 4,406,446 - HSERO_RS19205 0.85 -0.0 4,406,493 - -0.2 4,406,777 - HSERO_RS19210 0.19 +0.3 4,407,057 + HSERO_RS19210 0.46 -0.1 4,407,058 - HSERO_RS19210 0.46 +0.2 4,407,060 - HSERO_RS19210 0.46 +2.4 4,407,126 + HSERO_RS19210 0.53 +0.6 4,407,134 - HSERO_RS19210 0.53 +0.2 4,407,251 - HSERO_RS19210 0.65 +0.2 4,407,616 + +0.6
Or see this region's nucleotide sequence