Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19135

Experiment: L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS19130 and HSERO_RS19135 overlap by 4 nucleotidesHSERO_RS19135 and HSERO_RS19140 are separated by 330 nucleotides HSERO_RS19130: HSERO_RS19130 - geranyl transferase, at 4,390,150 to 4,391,097 _RS19130 HSERO_RS19135: HSERO_RS19135 - exodeoxyribonuclease, at 4,391,094 to 4,391,321 _RS19135 HSERO_RS19140: HSERO_RS19140 - Rieske (2Fe-2S) protein, at 4,391,652 to 4,392,776 _RS19140 Position (kb) 4391 4392Strain fitness (log2 ratio) -1 0 1at 4391.139 kb on - strand, within HSERO_RS19135at 4391.370 kb on - strandat 4391.417 kb on + strandat 4391.483 kb on - strandat 4391.553 kb on + strandat 4391.563 kb on - strandat 4391.565 kb on + strandat 4391.700 kb on + strandat 4391.732 kb on - strandat 4392.035 kb on + strand, within HSERO_RS19140at 4392.251 kb on - strand, within HSERO_RS19140at 4392.310 kb on + strand, within HSERO_RS19140

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine
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4,391,139 - HSERO_RS19135 0.20 +0.4
4,391,370 - +0.0
4,391,417 + +0.4
4,391,483 - -0.5
4,391,553 + +0.5
4,391,563 - -0.4
4,391,565 + -0.0
4,391,700 + -1.3
4,391,732 - -0.7
4,392,035 + HSERO_RS19140 0.34 -0.3
4,392,251 - HSERO_RS19140 0.53 +0.5
4,392,310 + HSERO_RS19140 0.58 +0.2

Or see this region's nucleotide sequence